Mercurial > repos > mingchen0919 > aurora_deseq2_site

view expose-outputs-to-galaxy-history.sh @ 5:20061de8f3f2 draft

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planemo upload commit 7d411a114317ebd9dfc6a20a7f132e653ccad986-dirty
author mingchen0919
date Mon, 14 May 2018 11:40:10 -0400
parents b69138a05735
children
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# change directory to tool outputs directory
cd ${REPORT_FILES_PATH}

# copy outputs from tool outputs directory to corresponding galaxy output path
if [ -e "rmarkdown_report.html" ]; then
  cp rmarkdown_report.html ${REPORT}
fi

if [ -e "index.html" ]; then
  cp index.html ${REPORT}
fi

if [ -e "padj-sorted-significant-genes.txt" ]; then
  cp padj-sorted-significant-genes.txt ${X_J}
fi