Mercurial > repos > mingchen0919 > aurora_deseq2

diff deseq2_render.R @ 7:cadfcfb4036d draft

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add r-dt
author mingchen0919
date Fri, 09 Mar 2018 00:02:09 -0500
parents caae0a188548
children 32ed0a8df05c
line wrap: on
line diff
--- a/deseq2_render.R	Thu Mar 08 22:04:17 2018 -0500
+++ b/deseq2_render.R	Fri Mar 09 00:02:09 2018 -0500
@@ -13,6 +13,9 @@
 library(ggplot2)
 library(plotly)
 library(htmltools)
+library(DESeq2)
+library(pheatmap)
+library(DT)
 #------------------------------------------------
 
 
@@ -25,7 +28,7 @@
 spec_matrix = as.matrix(
   data.frame(stringsAsFactors=FALSE,
               long_flags = c("X_e", "X_o", "X_d", "X_s", "X_t", "X_A", "X_B",
-                             "X_C", "X_D", "X_E", "X_F", "X_G", "X_H", "X_I"),
+                             "X_C", "X_D", "X_E", "X_F", "X_G", "X_H", "X_I", "X_J"),
              short_flags = c("e", "o", "d", "s", "t", "A", "B", "C", "D", "E",
                              "F", "G", "H", "I", "J"),
      argument_mask_flags = c(1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L,