Mercurial > repos > mingchen0919 > aurora_deseq2

diff deseq2.sh @ 3:caae0a188548 draft

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add deseq2 package
author mingchen0919
date Thu, 08 Mar 2018 21:03:01 -0500
parents 405d8fa2f560
children
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--- a/deseq2.sh	Thu Mar 08 20:13:30 2018 -0500
+++ b/deseq2.sh	Thu Mar 08 21:03:01 2018 -0500
@@ -6,12 +6,13 @@
   -s $sink_message
   -t '${__tool_directory__}' 
   
-  -A $count_data
-  -B $column_data
-  -C $design_formula
-  -D $treatment_name
-  -E $treated
-  -F $untreated
-  -G $test_type
-  -H $fit_type
-  -I $alpha
\ No newline at end of file
+  -A '$count_data'
+  -B '$column_data'
+  -C '$design_formula'
+  -D '$treatment_name'
+  -E '$treated'
+  -F '$untreated'
+  -G '$test_type'
+  -H '$fit_type'
+  -I '$alpha'
+  -J '$significant_genes'
\ No newline at end of file