Mercurial > repos > mingchen0919 > aurora_deseq2

diff rmarkdown_report.xml @ 29:24a7f1f92db7 draft

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planemo upload commit 4a2948a9dd56803572fe5e2d05ff50515ce6d96c-dirty
author mingchen0919
date Fri, 14 Sep 2018 14:03:11 -0400
parents 27cccfee3018
children 7e767425bb3d
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--- a/rmarkdown_report.xml	Thu Sep 13 15:34:54 2018 -0400
+++ b/rmarkdown_report.xml	Fri Sep 14 14:03:11 2018 -0400
@@ -5,7 +5,7 @@
     <requirements>
         <requirement type="package" version="1.15.0.6">pandoc</requirement>
         <requirement type="package" version="1.20.0">r-getopt</requirement>
-        <requirement type="package" version="1.3">r-rmarkdown</requirement>
+        <requirement type="package" version="1.6">r-rmarkdown</requirement>
         <requirement type="package" version="1.16.1">bioconductor-deseq2</requirement>
         <requirement type="package" version="4.5.6">r-plotly</requirement>
         <requirement type="package" version="2.2.1">r-ggplot2</requirement>
@@ -25,7 +25,7 @@
         export REPORT_FILES_PATH='$report.files_path' &&
 
         ############ create a hidden file to store r markdown rendering log
-        touch $report.files_path/.r_rendering.log.txt &&
+        touch $report.files_path/r_rendering.log.txt &&
 
         ############ finally run the render.R script
         Rscript '${__tool_directory__}/rmarkdown_report_render.R'