Mercurial > repos > mingchen0919 > aurora_curl
comparison rmarkdown_report.xml @ 1:e4392f52dc33 draft
planemo upload
| author | mingchen0919 |
|---|---|
| date | Mon, 14 May 2018 16:17:19 -0400 |
| parents | 7a3bb304fe1d |
| children | 350afb9412fc |
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| 0:7a3bb304fe1d | 1:e4392f52dc33 |
|---|---|
| 27 Rscript '${__tool_directory__}/rmarkdown_report_render.R' | 27 Rscript '${__tool_directory__}/rmarkdown_report_render.R' |
| 28 | 28 |
| 29 -o $report | 29 -o $report |
| 30 -d $report.files_path | 30 -d $report.files_path |
| 31 | 31 |
| 32 -n $file_ext | 32 -n $output_ext |
| 33 -u $url | 33 -u $url |
| 34 | 34 |
| 35 | 35 |
| 36 ]]></command> | 36 ]]></command> |
| 37 <inputs> | 37 <inputs> |
| 38 <param type="text" name="output_ext" argument="-O" label="file extension" | 38 <param type="text" name="output_ext" argument="-O" label="file extension" |
| 39 help="The output file extension, e.g. txt, csv, bam, sam, fasta, fastq" | 39 help="The output file extension, e.g. txt, csv, bam, sam, fasta, fastq" |
| 40 optional="False"/> | 40 optional="False"/> |
| 41 <param type="text" name="url" label="dataset url"/> | |
| 41 </inputs> | 42 </inputs> |
| 42 <outputs> | 43 <outputs> |
| 43 <data format="html" name="report" label="${tool_name} report on ${on_string}"> | 44 <data format="html" name="report" label="${tool_name} report on ${on_string}"> |
| 44 <discover_datasets pattern="__designation_and_ext__" directory="output_dir" visible="true"/> | 45 <discover_datasets pattern="__designation_and_ext__" directory="output_dir" visible="true"/> |
| 45 </data> | 46 </data> |