# HG changeset patch
# User mingchen0919
# Date 1528776920 14400
# Node ID af2e4c66261fe6edc86d8bbebdd0a639ba0bf607
# Parent  f547458859312fa549af0d495212418ccac688c7
planemo upload for repository https://github.com/feltus/BDSS

diff -r f54745885931 -r af2e4c66261f build-and-run-job-scripts.sh
--- a/build-and-run-job-scripts.sh	Tue Jun 12 00:11:42 2018 -0400
+++ b/build-and-run-job-scripts.sh	Tue Jun 12 00:15:20 2018 -0400
@@ -1,3 +1,6 @@
+# create a download_dir in current job working directory
+JOB_WORKING_DIR=$(pwd)
+
 # run job scripts within the tool outputs directory
 cd ${REPORT_FILES_PATH}
 mkdir download_dir
@@ -10,3 +13,5 @@
 echo 'done' >> bdss-download.sh
 
 sh bdss-download.sh
+
+cp -r download_dir ${JOB_WORKING_DIR}/download_dir
\ No newline at end of file