Mercurial > repos > mingchen0919 > aurora_bdss_sra

annotate expose-outputs-to-galaxy-history.sh @ 10:4b73dbd97a0e draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/feltus/BDSS
author mingchen0919
date Tue, 12 Jun 2018 12:30:21 -0400
parents 759232961286
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
759232961286 planemo upload for repository https://github.com/feltus/BDSS
mingchen0919
parents:
diff changeset
1 # change directory to tool outputs directory
759232961286 planemo upload for repository https://github.com/feltus/BDSS
mingchen0919
parents:
diff changeset
2 cd ${REPORT_FILES_PATH}
759232961286 planemo upload for repository https://github.com/feltus/BDSS
mingchen0919
parents:
diff changeset
3
759232961286 planemo upload for repository https://github.com/feltus/BDSS
mingchen0919
parents:
diff changeset
4 # copy outputs from tool outputs directory to corresponding galaxy output path
759232961286 planemo upload for repository https://github.com/feltus/BDSS
mingchen0919
parents:
diff changeset
5 if [ -e "rmarkdown_report.html" ]; then
759232961286 planemo upload for repository https://github.com/feltus/BDSS
mingchen0919
parents:
diff changeset
6 cp rmarkdown_report.html ${REPORT}
759232961286 planemo upload for repository https://github.com/feltus/BDSS
mingchen0919
parents:
diff changeset
7 fi
759232961286 planemo upload for repository https://github.com/feltus/BDSS
mingchen0919
parents:
diff changeset
8
759232961286 planemo upload for repository https://github.com/feltus/BDSS
mingchen0919
parents:
diff changeset
9 if [ -e "index.html" ]; then
759232961286 planemo upload for repository https://github.com/feltus/BDSS
mingchen0919
parents:
diff changeset
10 cp index.html ${REPORT}
759232961286 planemo upload for repository https://github.com/feltus/BDSS
mingchen0919
parents:
diff changeset
11 fi