Mercurial > repos > messersc > jamm

view README.md @ 1:243f75d0ed6e draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Uploaded. Includes new release 1.0.7 with fixed optional controls.
author messersc
date Thu, 19 Feb 2015 05:39:45 -0500
parents d42f4d78c85e
children
line wrap: on
line source

JAMM: a peak finder for joint analysis of NGS replicates
====
doi: 10.1093/bioinformatics/btu568

JAMM (Joint Analysis of NGS replicates via Mixture Model clustering): 
a peak finder that can integrate information from biological replicates, 
determine enrichment site widths accurately and resolve neighboring narrow peaks. 
JAMM is a universal peak finder that is applicable to different types of datasets

Stand-alone version
===================

The latest release of the stand-alone version can be found here:
http://code.google.com/p/jamm-peak-finder/

(You can also use the stand-alone version from this repository, ignoring the 
Galaxy-specific files. The upstream version might be never, though)

Galaxy
====

This is a wrapper for JAMM for use in Galaxy (usegalaxy.org)