|
1
|
1 Intensity check
|
|
|
2 =======
|
|
|
3
|
|
|
4 Metadata
|
|
|
5 -----------
|
|
|
6
|
|
|
7 * **@name**: Intensity check
|
|
|
8 * **@version**: 1.2.8
|
|
|
9 * **@authors**: Original code: Anthony Fernandes (PFEM - INRA) - Maintainer: Melanie Petera (PFEM - INRAE - MetaboHUB)
|
|
|
10 * **@init date**: 2018, September
|
|
|
11 * **@main usage**: This tool computes some statistical measures, number of missing values and mean fold change.
|
|
|
12
|
|
|
13
|
|
|
14 Context
|
|
|
15 -----------
|
|
|
16
|
|
|
17 This tool is provided as one of the [Workflow4Metabolomics](http://workflow4metabolomics.org) Galaxy instance statistical tools.
|
|
|
18 W4M is a French infrastructure providing software tools to process, analyse and annotate metabolomics data.
|
|
|
19
|
|
|
20 User interface is based on the Galaxy platform (homepage: https://galaxyproject.org/). It is an open, web-based platform for data intensive biomedical research.
|
|
|
21 Whether on the free public server or your own instance, you can perform, reproduce, and share complete analyses.
|
|
|
22
|
|
|
23
|
|
|
24 Configuration
|
|
|
25 -----------
|
|
|
26
|
|
|
27 ### Requirement:
|
|
|
28 * R software: version > 3.0.0 recommended
|
|
|
29 * Specific R libraries: 'batch'
|
|
|
30
|
|
|
31
|
|
|
32 Technical description
|
|
|
33 -----------
|
|
|
34
|
|
|
35 Main files:
|
|
|
36
|
|
|
37 - Script_intensity_check.R: R function (core script)
|
|
|
38 - wrapper_intensity_check.R: R script to link the main R function to inputs
|
|
|
39 - xml_intensity_check.xml: XML wrapper (interface for Galaxy)
|
|
|
40
|
|
|
41
|
|
|
42 Services provided
|
|
|
43 -----------
|
|
|
44
|
|
|
45 * Help and support: support@workflow4metabolomics.org
|
|
|
46
|
|
|
47
|
|
|
48 License
|
|
|
49 -----------
|
|
|
50
|
|
|
51 * Cea Cnrs Inria Logiciel Libre License, version 2.1 (CECILL-2.1)
|
