Mercurial > repos > melpetera > corr_table
diff CorrTable/Corr_wrap.r @ 1:431644dd0d9a draft
Uploaded
| author | melpetera |
|---|---|
| date | Thu, 01 Aug 2019 11:17:35 -0400 |
| parents | ab8bce1e75b0 |
| children | f47f08b4b35c |
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--- a/CorrTable/Corr_wrap.r Mon Jan 14 08:41:33 2019 -0500 +++ b/CorrTable/Corr_wrap.r Thu Aug 01 11:17:35 2019 -0400 @@ -4,10 +4,12 @@ # WRAPPER FOR Corr_Script_samples_row.R (CORRELATION TABLE) # # # # Author: Ophelie BARBET # +# Maintainer: Melanie PETERA # # User: Galaxy # # Original data: used with Corr_Script_samples_row.R # # Starting date: # # V-1: First version of wrapper # +# V-2: Corresponds to XML version 1.0.0 # # # # # # Input files: 2 tables with common samples file # @@ -56,6 +58,7 @@ type_classes <- NULL reg_class_value <- NULL irreg_class_vect <- NULL +if(args$plot_choice == "none"){args$color_heatmap <- "no"; args$heatmap_out <- NULL} if(args$color_heatmap == "yes"){ type_classes <- args$type_classes if(type_classes == "regular"){ @@ -67,7 +70,7 @@ correlation.tab(args$tab1_in, args$tab2_in, args$tab1_samples, args$tab2_samples, args$corr_method, args$test_corr, risk_alpha, correct_multi, args$filter, filters_choice, threshold, -args$reorder_var, args$color_heatmap, type_classes, reg_class_value, irreg_class_vect, args$tabcorr_out, args$heatmap_out) +args$reorder_var, args$plot_choice, args$color_heatmap, type_classes, reg_class_value, irreg_class_vect, args$tabcorr_out, args$heatmap_out) cat('\n--------------------------------------------------------------------',