Mercurial > repos > melissacline > xena_import
changeset 1:a42384446daf
Deleted selected files
| author | melissacline |
|---|---|
| date | Wed, 03 Sep 2014 15:29:59 -0400 |
| parents | f532ccfadc89 |
| children | b3cd322f7749 |
| files | xena_import |
| diffstat | 1 files changed, 0 insertions(+), 396 deletions(-) [+] |
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--- a/xena_import Wed Sep 03 15:29:10 2014 -0400 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,396 +0,0 @@ -<!DOCTYPE HTML> - - - - - - - - - - - - - - - -<html> - <!--base_panels.mako--> - - - - <head> - <title>Galaxy Tool Shed</title> - <meta http-equiv="Content-Type" content="text/html; charset=utf-8" /> - <meta name = "viewport" content = "maximum-scale=1.0"> - <meta http-equiv="X-UA-Compatible" content="IE=Edge,chrome=1"> - - <link href="/static/style/base.css?v=1409176523" media="screen" rel="Stylesheet" type="text/css" /> -<link href="/static/style/autocomplete_tagging.css?v=1409176523" media="screen" rel="Stylesheet" type="text/css" /> -<link href="/static/style/tool_menu.css?v=1409176523" media="screen" rel="Stylesheet" type="text/css" /> - - - <link href="/static/style/base.css?v=1409176523" media="screen" rel="Stylesheet" type="text/css" /> -<link href="/static/style/jquery.rating.css?v=1409176523" media="screen" rel="Stylesheet" type="text/css" /> - <style type="text/css"> - #center { - right: 0 !important; - } - </style> - - - <style type="text/css"> - body { margin: 0; padding: 0; overflow: hidden; } - #left { - background: #C1C9E5 url(/static/style/menu_bg.png) top repeat-x; - } - .unified-panel-body { - overflow: auto; - } - .toolMenu { - margin-left: 10px; - } - </style> - - - - - - - <script src="/static/scripts/libs/jquery/jquery.js?v=1409176523" type="text/javascript"></script> -<script src="/static/scripts/libs/jquery/jquery.migrate.js?v=1409176523" type="text/javascript"></script> -<script src="/static/scripts/libs/jquery/select2.js?v=1409176523" type="text/javascript"></script> -<script src="/static/scripts/libs/bootstrap.js?v=1409176523" type="text/javascript"></script> -<script src="/static/scripts/libs/underscore.js?v=1409176523" type="text/javascript"></script> -<script src="/static/scripts/libs/backbone/backbone.js?v=1409176523" type="text/javascript"></script> -<script src="/static/scripts/libs/backbone/backbone-relational.js?v=1409176523" type="text/javascript"></script> -<script src="/static/scripts/libs/handlebars.runtime.js?v=1409176523" type="text/javascript"></script> -<script src="/static/scripts/galaxy.base.js?v=1409176523" type="text/javascript"></script> -<script src="/static/scripts/libs/require.js?v=1409176523" type="text/javascript"></script> - - <script src="/static/scripts/templates/compiled/template-popupmenu-menu.js?v=1409176523" type="text/javascript"></script> - - <script src="/static/scripts/mvc/ui.js?v=1409176523" type="text/javascript"></script> - - <script type="text/javascript"> - var galaxy_config = { - url: { - styles : "/static/style" - } - }; - - if (window != window.top) - $('<link href="' + galaxy_config.url.styles + '/galaxy.frame.masthead.css" rel="stylesheet">').appendTo('head'); - - // console protection - window.console = window.console || { - log : function(){}, - debug : function(){}, - info : function(){}, - warn : function(){}, - error : function(){}, - assert : function(){} - }; - - // Set up needed paths. - var galaxy_paths = new GalaxyPaths({ - root_path: '/', - image_path: '/static/images', - - tool_url: '/api/tools', - history_url: '/api/histories', - - datasets_url: '/api/datasets', - sweepster_url: '/visualization/sweepster', - visualization_url: '/visualization/save', - }); - - require.config({ - baseUrl: "/static/scripts", - shim: { - "libs/underscore": { exports: "_" }, - "libs/backbone/backbone": { exports: "Backbone" }, - "libs/backbone/backbone-relational": ["libs/backbone/backbone"] - } - }); - - var frame_manager = null; - require(['galaxy.frame'], function(frame) { this.frame_manager = new frame.GalaxyFrameManager(galaxy_config); }); - </script> - - - - </head> - - <body scroll="no" class="full-content "> - <div id="everything" style="position: absolute; top: 0; left: 0; width: 100%; height: 100%;"> - <div id="background"></div> - <div id="masthead" class="navbar navbar-fixed-top"> - <div class="masthead-inner navbar-inner"> - - - <div style="position: relative; right: -50%; float: left;"> - <div style="display: block; position: relative; right: 50%;"> - - <ul class="nav" border="0" cellspacing="0"> - - - - - - <li class="" style=""> - <a class="" data-toggle="dropdown" target="_parent" href="/repository">Repositories</a> - </li> - - - - - <li class=" admin-only" style="display: none;"> - <a class="" data-toggle="dropdown" target="_parent" href="/admin">Admin</a> - </li> - - - - - <li class=" dropdown" style=""> - <a class=" dropdown-toggle" data-toggle="dropdown">Help<b class='caret'></b></a> - <ul class="dropdown-menu"> - <li> - - <a target="_blank" href="http://wiki.g2.bx.psu.edu/Support">Support</a> - </li> - <li> - - <a target="_blank" href="http://wiki.g2.bx.psu.edu/Tool%20Shed">Tool shed wiki</a> - </li> - <li> - - <a target="_blank" href="http://wiki.g2.bx.psu.edu/">Galaxy wiki</a> - </li> - <li> - - <a target="_blank" href="http://galaxycast.org">Video tutorials (screencasts)</a> - </li> - <li> - - <a target="_blank" href="http://wiki.g2.bx.psu.edu/Citing%20Galaxy">How to Cite Galaxy</a> - </li> - </ul> - </li> - - - - - <li class=" dropdown" style=""> - <a class=" dropdown-toggle" data-toggle="dropdown">User<b class='caret'></b></a> - <ul class="dropdown-menu"> - <li> - - <a target="galaxy_main" href="/user/login">Login</a> - </li> - <li> - - <a target="galaxy_main" href="/user/create?cntrller=user">Register</a> - </li> - </ul> - </li> - - - <li class=" dropdown" style="display: none;"> - <a class=" dropdown-toggle" data-toggle="dropdown">User<b class='caret'></b></a> - <ul class="dropdown-menu"> - <li> - <a>Logged in as <span id="user-email"></span></a> - </li> - <li> - - <a target="galaxy_main" href="/user?cntrller=user">Preferences</a> - </li> - <li> - - <a target="galaxy_main" href="/user/api_keys?cntrller=user">API Keys</a> - </li> - <li> - - <a target="_top" href="/user/logout">Logout</a> - </li> - <li class="divider"></li> - </ul> - </li> - - </ul> - </div> - </div> - - <div class="title"> - Galaxy Tool Shed - </a> - </div> - - </div> - </div> - <div id="messagebox" class="panel-info-message"> - </div> - - - - - - - <div id="overlay" style='display: none;'> - - <div id="overlay-background" class="modal-backdrop fade "></div> - - <div id="dialog-box" class="modal dialog-box" border="0" style='display: none;'> - <div class="modal-header"> - <span><h3 class='title'></h3></span> - </div> - <div class="modal-body"></div> - <div class="modal-footer"> - <div class="buttons" style="float: right;"></div> - <div class="extra_buttons" style=""></div> - <div style="clear: both;"></div> - </div> - </div> - - </div> - - <div id="left"> - - - <div class="unified-panel-header" unselectable="on"> - <div class='unified-panel-header-inner'>29 valid tools on Aug 27, 2014</div> - </div> - <div class="unified-panel-body"> - <div class="toolMenu"> - <div class="toolSectionList"> - <div class="toolSectionPad"></div> - <div class="toolSectionTitle"> - All Repositories - </div> - <div class="toolTitle"> - <a href="/repository">Browse by category</a> - </div> - </div> - </div> - </div> - - <div class="unified-panel-footer"> - <div class="panel-collapse"></span></div> - <div class="drag"></div> - </div> - </div> - <div id="center"> - - - <iframe name="galaxy_main" id="galaxy_main" frameborder="0" style="position: absolute; width: 100%; height: 100%;" src="/repository/view_repository?status=done&message=&id=149c5ffa3420467d"></iframe> - - </div> - </div> - </body> - - <script src="/static/scripts/libs/jquery/jquery.event.drag.js?v=1409176523" type="text/javascript"></script> -<script src="/static/scripts/libs/jquery/jquery.event.hover.js?v=1409176523" type="text/javascript"></script> -<script src="/static/scripts/libs/jquery/jquery.form.js?v=1409176523" type="text/javascript"></script> -<script src="/static/scripts/libs/jquery/jquery.rating.js?v=1409176523" type="text/javascript"></script> -<script src="/static/scripts/galaxy.panels.js?v=1409176523" type="text/javascript"></script> - <script type="text/javascript"> - - ensure_dd_helper(); - - var lp = new Panel( { panel: $("#left"), center: $("#center"), drag: $("#left > .unified-panel-footer > .drag" ), toggle: $("#left > .unified-panel-footer > .panel-collapse" ) } ); - force_left_panel = function( x ) { lp.force_panel( x ) }; - - - </script> - <![if !IE]> - <script type="text/javascript"> - var upload_form_error = function( msg ) { - if ( ! $("iframe#galaxy_main").contents().find("body").find("div[class='errormessage']").size() ) { - $("iframe#galaxy_main").contents().find("body").prepend( '<div class="errormessage" name="upload_error">' + msg + '</div><p/>' ); - } else { - $("iframe#galaxy_main").contents().find("body").find("div[class='errormessage']").text( msg ); - } - } - var uploads_in_progress = 0; - jQuery( function() { - $("iframe#galaxy_main").load( function() { - $(this).contents().find("form").each( function() { - if ( $(this).find("input[galaxy-ajax-upload]").length > 0 ){ - $(this).submit( function() { - // Only bother using a hidden iframe if there's a file (e.g. big data) upload - var file_upload = false; - $(this).find("input[galaxy-ajax-upload]").each( function() { - if ( $(this).val() != '' ) { - file_upload = true; - } - }); - if ( ! file_upload ) { - return true; - } - // Make a synchronous request to create the datasets first - var async_datasets; - var upload_error = false; - $.ajax( { - async: false, - type: "POST", - url: "/tool_runner/upload_async_create", - data: $(this).formSerialize(), - dataType: "json", - success: function(array_obj, status) { - if (array_obj.length > 0) { - if (array_obj[0] == 'error') { - upload_error = true; - upload_form_error(array_obj[1]); - } else { - async_datasets = array_obj.join(); - } - } else { - // ( gvk 1/22/10 ) FIXME: this block is never entered, so there may be a bug somewhere - // I've done some debugging like checking to see if array_obj is undefined, but have not - // tracked down the behavior that will result in this block being entered. I believe the - // intent was to have this block entered if the upload button is clicked on the upload - // form but no file was selected. - upload_error = true; - upload_form_error( 'No data was entered in the upload form. You may choose to upload a file, paste some data directly in the data box, or enter URL(s) to fetch data.' ); - } - } - } ); - if (upload_error == true) { - return false; - } else { - $(this).find("input[name=async_datasets]").val( async_datasets ); - $(this).append("<input type='hidden' name='ajax_upload' value='true'>"); - } - // iframe submit is required for nginx (otherwise the encoding is wrong) - $(this).ajaxSubmit( { iframe: true, - complete: function (xhr, stat) { - uploads_in_progress--; - if (uploads_in_progress == 0) { - window.onbeforeunload = null; - } - } - } ); - uploads_in_progress++; - window.onbeforeunload = function() { return "Navigating away from the Galaxy analysis interface will interrupt the file upload(s) currently in progress. Do you really want to do this?"; } - if ( $(this).find("input[name='folder_id']").val() != undefined ) { - var library_id = $(this).find("input[name='library_id']").val(); - var show_deleted = $(this).find("input[name='show_deleted']").val(); - if ( location.pathname.indexOf( 'admin' ) != -1 ) { - $("iframe#galaxy_main").attr("src","/library_common/browse_library?cntrller=library_admin&id=" + library_id + "&created_ldda_ids=" + async_datasets + "&show_deleted=" + show_deleted); - } else { - $("iframe#galaxy_main").attr("src","/library_common/browse_library?cntrller=library&id=" + library_id + "&created_ldda_ids=" + async_datasets + "&show_deleted=" + show_deleted); - } - } else { - $("iframe#galaxy_main").attr("src","/tool_runner/upload_async_message"); - } - return false; - }); - } - }); - }); - }); - </script> - <![endif]> - -</html>