diff xena_import.xml @ 16:7f03b062f330 default tip

Cleaned up the user interface a bit

--- a/xena_import.xml	Mon Sep 15 12:05:28 2014 -0700
+++ b/xena_import.xml	Tue Sep 23 21:18:54 2014 -0700
@@ -4,13 +4,20 @@
     <requirement type="package" version="1.0">installXena</requirement>
   </requirements>
   <command interpreter="python">
-    xena_import.py ${xenaInputData} ${cohort} ${metadataType} 
+    xena_import.py ${xenaInputData} ${cohort} ${metadataType} > ${outfile}
   </command>
   <inputs>
     <param format="data" type="data" name="xenaInputData" label="Data to import to Xena" optional="false"/>
     <param format="str" type="text" name="cohort" label="Cohort" optional="false"/>
-    <param format="str" type="text" name="metadataType" label="Data Type (e.g. clinicalMatrix)" optional="false"/>
+    <param format="str" type="select" name="metadataType" label="File Format">
+      <option value="genomicMatrix">Rows(Identifiers) by Columns (Samples)</option>
+      <option value="clinicalMatrix">Rows(Samples) by Columns (Identifiers)</option>
+      <option value="mutationVector">Mutation Data</option>
+    </param>
   </inputs>
+  <outputs>
+    <data foramt="txt" name="outfile"/>
+  </outputs>
   <help>
     To Appear
   </help>