comparison xena_import.xml @ 16:7f03b062f330 default tip

Cleaned up the user interface a bit

15:ff0cdac9636e

  <description>Import from Galaxy into the Xena VM</description>
  <requirements>
    <requirement type="package" version="1.0">installXena</requirement>
  </requirements>
  <command interpreter="python">
    xena_import.py ${xenaInputData} ${cohort} ${metadataType} 
  </command>
  <inputs>
    <param format="data" type="data" name="xenaInputData" label="Data to import to Xena" optional="false"/>
    <param format="str" type="text" name="cohort" label="Cohort" optional="false"/>
    <param format="str" type="text" name="metadataType" label="Data Type (e.g. clinicalMatrix)" optional="false"/>
  </inputs>
  <help>
    To Appear
  </help>
</tool>

16:7f03b062f330

  <description>Import from Galaxy into the Xena VM</description>
  <requirements>
    <requirement type="package" version="1.0">installXena</requirement>
  </requirements>
  <command interpreter="python">
    xena_import.py ${xenaInputData} ${cohort} ${metadataType} > ${outfile}
  </command>
  <inputs>
    <param format="data" type="data" name="xenaInputData" label="Data to import to Xena" optional="false"/>
    <param format="str" type="text" name="cohort" label="Cohort" optional="false"/>
    <param format="str" type="select" name="metadataType" label="File Format">
      <option value="genomicMatrix">Rows(Identifiers) by Columns (Samples)</option>
      <option value="clinicalMatrix">Rows(Samples) by Columns (Identifiers)</option>
      <option value="mutationVector">Mutation Data</option>
    </param>
  </inputs>
  <outputs>
    <data foramt="txt" name="outfile"/>
  </outputs>
  <help>
    To Appear
  </help>
</tool>