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comparison xena_import.xml @ 3:cae2b765ca5d

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Changing how the Xena base dir is communicated
author melissacline
date Wed, 03 Sep 2014 16:02:24 -0700
parents b3cd322f7749
children 261a3d45a38a
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2:b3cd322f7749 3:cae2b765ca5d
2 <description>Import into the Xena VM</description> 2 <description>Import into the Xena VM</description>
3 <requirements> 3 <requirements>
4 <requirement type="package" version="1.0">installXena2</requirement> 4 <requirement type="package" version="1.0">installXena2</requirement>
5 </requirements> 5 </requirements>
6 <command interpreter="python"> 6 <command interpreter="python">
7 xena_import.py ${xenaInputData} ${cohort} ${metadataType} ${XENA_BASE_DIR}/files/ 7 xena_import.py ${xenaInputData} ${cohort} ${metadataType}
8 </command> 8 </command>
9 <inputs> 9 <inputs>
10 <param format="data" type="data" name="xenaInputData" label="Data to import to Xena" optional="false"/> 10 <param format="data" type="data" name="xenaInputData" label="Data to import to Xena" optional="false"/>
11 <param format="str" type="text" name="cohort" label="Cohort" optional="false"/> 11 <param format="str" type="text" name="cohort" label="Cohort" optional="false"/>
12 <param format="str" type="text" name="metadataType" label="Data Type (e.g. clinicalMatrix)" optional="false"/> 12 <param format="str" type="text" name="metadataType" label="Data Type (e.g. clinicalMatrix)" optional="false"/>