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10
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1 <tool id="xenaImport" description="Import into XENA from Galaxy" name="XENA Import" version="0.0.1">
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2 <description>Import from Galaxy into the Xena VM</description>
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2
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3 <requirements>
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4
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4 <requirement type="package" version="1.0">installXena</requirement>
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2
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5 </requirements>
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6 <command interpreter="python">
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16
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7 xena_import.py ${xenaInputData} ${cohort} ${metadataType} > ${outfile}
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2
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8 </command>
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9 <inputs>
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10 <param format="data" type="data" name="xenaInputData" label="Data to import to Xena" optional="false"/>
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11 <param format="str" type="text" name="cohort" label="Cohort" optional="false"/>
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16
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12 <param format="str" type="select" name="metadataType" label="File Format">
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13 <option value="genomicMatrix">Rows(Identifiers) by Columns (Samples)</option>
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14 <option value="clinicalMatrix">Rows(Samples) by Columns (Identifiers)</option>
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15 <option value="mutationVector">Mutation Data</option>
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16 </param>
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2
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17 </inputs>
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16
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18 <outputs>
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19 <data foramt="txt" name="outfile"/>
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20 </outputs>
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2
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21 <help>
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22 To Appear
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23 </help>
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24 </tool>
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