diff xenaFindDatasets/xenaFindDatasets.xml @ 0:a4253c71f31d

Uploaded

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/xenaFindDatasets/xenaFindDatasets.xml	Tue Sep 09 21:53:10 2014 -0400
@@ -0,0 +1,25 @@
+<tool id="xenaFindDatasets" description="Find datasets in the Xena database" name="Find Datasets in Xena" version="0.0.1">
+  <description>
+    Retrieve the cohorts and datasets that match the specified pattern.
+  </description>
+  <requirements>
+    <requirement type="package" version="1.0">installXena</requirement>
+  </requirements>
+  <command interpreter="python">
+    xenaFindDatasets.py ${datasetType} ${cohortName} $outFile
+  </command>
+  <inputs>
+    <param name="datasetType" type="select" label="Dataset Type">
+      <option value="genomicMatrix">Genomic Data</option>
+      <option value="clinicalMatrix">Clinical Data</option>
+      <option value="mutationVector">Mutation Data</option>
+    </param>
+    <param type="text" name="cohortName" label="Cohort (wildcard is %)" optional="true" />
+  </inputs>
+  <outputs>
+    <data format="tabular" name="outFile" />
+  </outputs>
+  <help>
+    Later...
+  </help>
+</tool>