Mercurial > repos > melissacline > xena_find_datasets
annotate xenaFindDatasets/xenaFindDatasets.xml @ 1:a1979987ecf2 default tip
Added a sanitizer object to the input field for the cohort name, so that users can include wildcards in their input
| author | melissacline |
|---|---|
| date | Wed, 10 Sep 2014 15:19:30 -0700 |
| parents | a4253c71f31d |
| children |
| rev | line source |
|---|---|
| 0 | 1 <tool id="xenaFindDatasets" description="Find datasets in the Xena database" name="Find Datasets in Xena" version="0.0.1"> |
| 2 <description> | |
| 3 Retrieve the cohorts and datasets that match the specified pattern. | |
| 4 </description> | |
| 5 <requirements> | |
| 6 <requirement type="package" version="1.0">installXena</requirement> | |
| 7 </requirements> | |
| 8 <command interpreter="python"> | |
| 9 xenaFindDatasets.py ${datasetType} ${cohortName} $outFile | |
| 10 </command> | |
| 11 <inputs> | |
| 12 <param name="datasetType" type="select" label="Dataset Type"> | |
| 13 <option value="genomicMatrix">Genomic Data</option> | |
| 14 <option value="clinicalMatrix">Clinical Data</option> | |
| 15 <option value="mutationVector">Mutation Data</option> | |
| 16 </param> | |
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a1979987ecf2
Added a sanitizer object to the input field for the cohort name, so that users can include wildcards in their input
melissacline
parents:
0
diff
changeset
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17 <param type="text" name="cohortName" label="Cohort (wildcard is %)" optional="true"> |
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a1979987ecf2
Added a sanitizer object to the input field for the cohort name, so that users can include wildcards in their input
melissacline
parents:
0
diff
changeset
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18 <sanitizer> |
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a1979987ecf2
Added a sanitizer object to the input field for the cohort name, so that users can include wildcards in their input
melissacline
parents:
0
diff
changeset
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19 <valid> |
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a1979987ecf2
Added a sanitizer object to the input field for the cohort name, so that users can include wildcards in their input
melissacline
parents:
0
diff
changeset
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20 <add value="%"/> |
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a1979987ecf2
Added a sanitizer object to the input field for the cohort name, so that users can include wildcards in their input
melissacline
parents:
0
diff
changeset
|
21 </valid> |
|
a1979987ecf2
Added a sanitizer object to the input field for the cohort name, so that users can include wildcards in their input
melissacline
parents:
0
diff
changeset
|
22 </sanitizer> |
|
a1979987ecf2
Added a sanitizer object to the input field for the cohort name, so that users can include wildcards in their input
melissacline
parents:
0
diff
changeset
|
23 </param> |
| 0 | 24 </inputs> |
| 25 <outputs> | |
| 26 <data format="tabular" name="outFile" /> | |
| 27 </outputs> | |
| 28 <help> | |
| 29 Later... | |
| 30 </help> | |
| 31 </tool> |