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1 <tool id="xenaFindDatasets" description="Find datasets in the Xena database" name="Find Datasets in Xena" version="0.0.1">
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2 <description>
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3 Retrieve the cohorts and datasets that match the specified pattern.
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4 </description>
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5 <requirements>
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6 <requirement type="package" version="1.0">installXena</requirement>
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7 </requirements>
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8 <command interpreter="python">
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9 xenaFindDatasets.py ${datasetType} ${cohortName} $outFile
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10 </command>
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11 <inputs>
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12 <param name="datasetType" type="select" label="Dataset Type">
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13 <option value="genomicMatrix">Genomic Data</option>
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14 <option value="clinicalMatrix">Clinical Data</option>
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15 <option value="mutationVector">Mutation Data</option>
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16 </param>
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17 <param type="text" name="cohortName" label="Cohort (wildcard is %)" optional="true" />
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18 </inputs>
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19 <outputs>
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20 <data format="tabular" name="outFile" />
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21 </outputs>
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22 <help>
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23 Later...
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24 </help>
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25 </tool>
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