Mercurial > repos > melissacline > ucsc_xena_platform

changeset 45:129ba676fd68

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
remove more strange xmls
author jingchunzhu <jingchunzhu@gmail.com>
date Mon, 27 Jul 2015 15:39:35 -0700
parents da86478b1d64
children cdba6c63dce5
files ucsc_xena_datapages.xml ucsc_xena_hub.xml
diffstat 2 files changed, 6 insertions(+), 28 deletions(-) [+]
line wrap: on
line diff
--- a/ucsc_xena_datapages.xml	Mon Jul 27 15:30:10 2015 -0700
+++ b/ucsc_xena_datapages.xml	Mon Jul 27 15:39:35 2015 -0700
@@ -1,19 +1,8 @@
 <?xml version="1.0"?>
 <tool name="Explore Data in Xena" id="ucsc_xenadatapages" tool_type="data_source">
-    <description>Browse data in the federated UCSC Xena platform</description>
-    <command interpreter="python">ucsc_xena_download.py $genomic $__app__.config.output_size_limit</command>   
-   <inputs action="https://genome-cancer.soe.ucsc.edu/proj/site/xena/datapages/" check_values="false" method="get">
-         <display>Explore the data in Xena $GALAXY_URL</display>
-        <param name="GALAXY_URL" type="baseurl" value="/tool_runner" />
-        <param name="tool_id" type="hidden" value="ucsc_xenadatapages" />
-    </inputs>
-    <request_param_translation>
-        <request_param galaxy_name="URL_method" remote_name="URL_method" missing="get" />
-        <request_param galaxy_name="URL" remote_name="URL" missing="" />
-    </request_param_translation>
-    <uihints minwidth="800"/>
-    <outputs>
-        <data name="genomic" format="tabular" label="#echo $URL.rsplit('/',1)[1].rsplit('.',1)[0]+' genomic'" />
-    </outputs>
-    <options sanitize="False" refresh="True"/>
+  <description>Browse data in the federated UCSC Xena platform</description>
+  <inputs action="https://genome-cancer.soe.ucsc.edu/proj/site/xena/datapages/" >
+    <param name="GALAXY_URL" type="baseurl" value="/tool_runner" />
+    <param name="tool_id" type="hidden" value="ucsc_xenadatapages" />
+  </inputs>
 </tool>
--- a/ucsc_xena_hub.xml	Mon Jul 27 15:30:10 2015 -0700
+++ b/ucsc_xena_hub.xml	Mon Jul 27 15:39:35 2015 -0700
@@ -1,19 +1,8 @@
 <?xml version="1.0"?>
 <tool name="Xena Data Hub" id="ucsc_xenadatahub" tool_type="data_source">
     <description>Build your Xena Data Hubs</description>
-    <command interpreter="python">ucsc_xena_download.py $genomic $__app__.config.output_size_limit</command>   
-    <inputs action="https://genome-cancer.soe.ucsc.edu/proj/site/xena/hub/" check_values="false" method="get">
-        <display>Select your Xena Data Hub $GALAXY_URL</display>
+    <inputs action="https://genome-cancer.soe.ucsc.edu/proj/site/xena/hub/" >
         <param name="GALAXY_URL" type="baseurl" value="/tool_runner" />
         <param name="tool_id" type="hidden" value="ucsc_xenadatapages" />
     </inputs>
-    <request_param_translation>
-        <request_param galaxy_name="URL_method" remote_name="URL_method" missing="get" />
-        <request_param galaxy_name="URL" remote_name="URL" missing="" />
-    </request_param_translation>
-    <uihints minwidth="800"/>
-    <outputs>
-        <data name="genomic" format="tabular" label="#echo $URL.rsplit('/',1)[1].rsplit('.',1)[0]+' genomic'" />
-    </outputs>
-    <options sanitize="False" refresh="True"/>
 </tool>