changeset 39:066ae9df2d27

labeling descriptions edit

--- a/ucsc_xenabrowser.xml	Fri Jul 24 12:12:37 2015 -0700
+++ b/ucsc_xenabrowser.xml	Mon Jul 27 00:46:53 2015 -0700
@@ -1,12 +1,6 @@
 <?xml version="1.0"?>
-<!--
-    If the value of 'URL_method' is 'get', the request will consist of the value of 'URL' coming back in
-    the initial response.  If value of 'URL_method' is 'post', any additional params coming back in the
-    initial response ( in addition to 'URL' ) will be encoded and appended to URL and a post will be performed.
-   July 13, 2015
--->
-<tool name="UCSC Xena Browser" id="ucsc_xenabrowser" tool_type="data_source">
-    <description>Run the UCSC Xena Browser as a Galaxy tool.</description>
+<tool name="Xena Visualization" id="ucsc_xenabrowser" tool_type="data_source">
+    <description>UCSC Xena Browser visualization</description>
     <command interpreter="python">ucsc_xena_download.py $genomic $clinical $__app__.config.output_size_limit</command>   
     <inputs action="https://genome-cancer.soe.ucsc.edu/proj/site/xena/heatmap/" check_values="false" method="get">
          <display>go to UCSC Xena Browser $GALAXY_URL</display>

--- a/xenaGetDataset.xml	Fri Jul 24 12:12:37 2015 -0700
+++ b/xenaGetDataset.xml	Mon Jul 27 00:46:53 2015 -0700
@@ -1,6 +1,6 @@
-<tool id="xenaGetDataset" description="Get a specified dataset and metadata from the Xena database" name="Get Data in Xena" version="0.0.2">
+<tool id="xenaGetDataset"  name="Get Data from Xena" version="0.0.2">
   <description>
-    Retrieve a dataset from Xena
+    Get a specified dataset and its associated metadata from the Xena database
   </description>
   <requirements>
     <requirement type="package" version="1.0">installXena</requirement>
@@ -19,6 +19,6 @@
     <data format="tabular" name="dataFile" label="${dataset}" />
   </outputs>
   <help>
-    Given the URL of a Xena dataset, download the data into a Galaxy dataset.  Enter the URL of the dataset in the Dataset URL field.  Xena dataset URLs can be obtained through the Explore Data in Xena tool.  The accompanying metadata will be downloaded automatically along with the data, and will be stored in a second Galaxy dataset.
+    Given the data hub name and the dataset id, download the data into a Galaxy dataset. Xena dataset id can be obtained through the Explore Data in Xena tool.  The accompanying metadata will be downloaded automatically along with the data, and will be stored in a second Galaxy dataset.
   </help>
 </tool>

--- a/xena_import.xml	Fri Jul 24 12:12:37 2015 -0700
+++ b/xena_import.xml	Mon Jul 27 00:46:53 2015 -0700
@@ -1,5 +1,5 @@
 <tool id="xenaImport" name="XENA Import" version="0.0.1">
-  <description>Import from Galaxy into the Xena VM</description>
+  <description>Import a Galaxy dataset into the Xena Hub running on this galaxy instance</description>
   <requirements>
     <requirement type="package" version="1.0">installXena</requirement>
   </requirements>