# HG changeset patch
# User melissacline
# Date 1433281845 25200
# Node ID 8ac29f84644b2c53c84ee690577796caf657ba57
# Parent  98b498545a52279a9e82639ee457221669f4f36f
Updated Xena URLs

diff -r 98b498545a52 -r 8ac29f84644b ucsc_xena_datapages.xml
--- a/ucsc_xena_datapages.xml	Wed Jan 14 16:35:12 2015 -0800
+++ b/ucsc_xena_datapages.xml	Tue Jun 02 14:50:45 2015 -0700
@@ -7,7 +7,7 @@
 <tool name="Explore Data in Xena" id="ucsc_xenadatapages" tool_type="data_source">
     <description>Browse the UCSC Xena Data Pages.</description>
     <command interpreter="python">ucsc_xena_download.py $genomic $__app__.config.output_size_limit</command>   
-    <inputs action="https://tcga1.kilokluster.ucsc.edu/~jzhu/proj/site/hgHeatmap-cavm/datapages" check_values="false" method="get">
+    <inputs action="https://genome-cancer.ucsc.edu/proj/site/xena/datapages/" check_values="false" method="get">
         <display>Explore the data in Xena $GALAXY_URL</display>
         <param name="GALAXY_URL" type="baseurl" value="/tool_runner" />
         <param name="tool_id" type="hidden" value="ucsc_xenadatapages" />
diff -r 98b498545a52 -r 8ac29f84644b ucsc_xena_hub.xml
--- a/ucsc_xena_hub.xml	Wed Jan 14 16:35:12 2015 -0800
+++ b/ucsc_xena_hub.xml	Tue Jun 02 14:50:45 2015 -0700
@@ -7,7 +7,7 @@
 <tool name="Xena Data Hub" id="ucsc_xenadatahub" tool_type="data_source">
     <description>Select your Xena Data Hub</description>
     <command interpreter="python">ucsc_xena_download.py $genomic $__app__.config.output_size_limit</command>   
-    <inputs action="https://genome-cancer.ucsc.edu/proj/site/hgHeatmap-cavm/hub/" check_values="false" method="get">
+    <inputs action="https://genome-cancer.ucsc.edu/proj/site/xena/hub/" check_values="false" method="get">
         <display>Select your Xena Data Hub $GALAXY_URL</display>
         <param name="GALAXY_URL" type="baseurl" value="/tool_runner" />
         <param name="tool_id" type="hidden" value="ucsc_xenadatapages" />
diff -r 98b498545a52 -r 8ac29f84644b ucsc_xenabrowser.xml
--- a/ucsc_xenabrowser.xml	Wed Jan 14 16:35:12 2015 -0800
+++ b/ucsc_xenabrowser.xml	Tue Jun 02 14:50:45 2015 -0700
@@ -7,7 +7,7 @@
 <tool name="UCSC Xena Browser" id="ucsc_xenabrowser" tool_type="data_source">
     <description>Run the UCSC Xena Browser as a Galaxy tool.</description>
     <command interpreter="python">ucsc_xena_download.py $genomic $clinical $__app__.config.output_size_limit</command>   
-    <inputs action="https://genome-cancer.ucsc.edu/proj/site/hgHeatmap-cavm/" check_values="false" method="get">
+    <inputs action="https://genome-cancer.ucsc.edu/proj/site/xena/heatmap/" check_values="false" method="get">
         <display>go to UCSC Xena Browser $GALAXY_URL</display>
         <param name="GALAXY_URL" type="baseurl" value="/tool_runner" />
         <param name="tool_id" type="hidden" value="ucsc_xenabrowser" />
diff -r 98b498545a52 -r 8ac29f84644b xena_utils.pyc
Binary file xena_utils.pyc has changed