# HG changeset patch
# User melissacline
# Date 1426557929 25200
# Node ID 80e588115eae0d9332373c28c77dcb7622206652
# Parent  8c7cb04577bd0d419e978e6c731fb5bbdd7747df# Parent  14aaed60e07bcc39ce2403c6fd97c1f7f4fc863f
Fixed the URL for the UCSC Xena datapages tool

diff -r 14aaed60e07b -r 80e588115eae ucsc_xena_datapages.xml
--- a/ucsc_xena_datapages.xml	Mon Mar 16 18:20:24 2015 -0700
+++ b/ucsc_xena_datapages.xml	Mon Mar 16 19:05:29 2015 -0700
@@ -4,13 +4,13 @@
     the initial response.  If value of 'URL_method' is 'post', any additional params coming back in the
     initial response ( in addition to 'URL' ) will be encoded and appended to URL and a post will be performed.
 -->
-<tool name="Explore Data in Xena" id="ucsc_xenadatapages" tool_type="data_source">
+<tool name="Explore Data in Xena" id="ucsc_xena_datapages" tool_type="data_source">
     <description>Browse the UCSC Xena Data Pages.</description>
-    <command interpreter="python">ucsc_xena_download.py $genomic $__app__.config.output_size_limit</command>   
+    <command interpreter="python">ucsc_xena_download.py $genomic $clinical $__app__.config.output_size_limit</command>   
     <inputs action="https://genome-cancer.ucsc.edu/proj/site/hgHeatmap-cavm/datapages" check_values="false" method="get">
-        <display>Explore the data in Xena $GALAXY_URL</display>
+        <display>go to UCSC Xena Browser $GALAXY_URL</display>
         <param name="GALAXY_URL" type="baseurl" value="/tool_runner" />
-        <param name="tool_id" type="hidden" value="ucsc_xenadatapages" />
+        <param name="tool_id" type="hidden" value="ucsc_xena_datapages" />
     </inputs>
     <request_param_translation>
         <request_param galaxy_name="URL_method" remote_name="URL_method" missing="get" />
@@ -19,6 +19,7 @@
     <uihints minwidth="800"/>
     <outputs>
         <data name="genomic" format="tabular" label="#echo $URL.rsplit('/',1)[1].rsplit('.',1)[0]+' genomic'" />
+        <data name="clinical" format="tabular" label="#echo $URL.rsplit('/',1)[1].rsplit('.',1)[0]+' clinical'"/>
     </outputs>
     <options sanitize="False" refresh="True"/>
 </tool>
diff -r 14aaed60e07b -r 80e588115eae xena_utils.pyc
Binary file xena_utils.pyc has changed