Mercurial > repos > melissacline > ucsc_xena_platform

<?xml version="1.0"?>
<tool name="Xena Visualization" id="ucsc_xenabrowser" tool_type="data_source">
    <description>UCSC Xena Browser visualization</description>
    <command interpreter="python">ucsc_xena_download.py $genomic $clinical $__app__.config.output_size_limit</command>
    <inputs action="https://genome-cancer.soe.ucsc.edu/proj/site/xena/heatmap/" check_values="false" method="get">
         <display>go to UCSC Xena Browser $GALAXY_URL</display>
        <param name="GALAXY_URL" type="baseurl" value="/tool_runner" />
        <param name="tool_id" type="hidden" value="ucsc_xenabrowser" />
    </inputs>
    <request_param_translation>
        <request_param galaxy_name="URL_method" remote_name="URL_method" missing="get" />
        <request_param galaxy_name="URL" remote_name="URL" missing="" />
    </request_param_translation>
    <uihints minwidth="800"/>
    <outputs>
        <data name="genomic" format="tabular" label="#echo $URL.rsplit('/',1)[1].rsplit('.',1)[0]+' genomic'" />
        <data name="clinical" format="tabular" label="#echo $URL.rsplit('/',1)[1].rsplit('.',1)[0]+' clinical'"/>
    </outputs>
    <options sanitize="False" refresh="True"/>
</tool>
author	jingchunzhu <jingchunzhu@gmail.com>
date	Mon, 27 Jul 2015 00:59:02 -0700
parents	066ae9df2d27
children	da86478b1d64