Mercurial > repos > melissacline > ucsc_xena_platform
view xenaGetDataset.py @ 5:c5b71ce5f7b1
Tweaking the xena import options - for a second time (grrr)
author | melissacline |
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date | Wed, 11 Feb 2015 17:15:22 -0800 |
parents | 8bb037f88ed2 |
children | 02b0824c7d60 |
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#!/usr/bin/env python import argparse import re import urllib2 def main(): parser = argparse.ArgumentParser() parser.add_argument("dataHub", type=str) parser.add_argument("datasetId", type=str) parser.add_argument("metadatafile", type=str) parser.add_argument("datafile", type=str) args = parser.parse_args() datasetUrlHost = re.sub("/proj/", "/download/", args.dataHub) datasetIdTokens = re.split("/", args.datasetId) datasetUrl = datasetUrlHost + "/" + "/".join(datasetIdTokens[1:]) print datasetUrl metadataUrl = datasetUrl + ".json" mm = urllib2.urlopen(metadataUrl) with open(args.metadatafile, "w") as metadata: metadata.write(mm.read()) mm.close() dd = urllib2.urlopen(datasetUrl) with open(args.datafile, "w") as data: data.write(dd.read()) dd.close() if __name__ == "__main__": main()