Mercurial > repos > melissacline > ucsc_xena_platform

view ucsc_xena_datapages.xml @ 42:bc9784300015

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
more reliable, error handling
author jingchunzhu <jingchunzhu@gmail.com>
date Mon, 27 Jul 2015 12:01:42 -0700
parents fd24e220f240
children 129ba676fd68
line wrap: on
line source

<?xml version="1.0"?>
<tool name="Explore Data in Xena" id="ucsc_xenadatapages" tool_type="data_source">
    <description>Browse data in the federated UCSC Xena platform</description>
    <command interpreter="python">ucsc_xena_download.py $genomic $__app__.config.output_size_limit</command>   
   <inputs action="https://genome-cancer.soe.ucsc.edu/proj/site/xena/datapages/" check_values="false" method="get">
         <display>Explore the data in Xena $GALAXY_URL</display>
        <param name="GALAXY_URL" type="baseurl" value="/tool_runner" />
        <param name="tool_id" type="hidden" value="ucsc_xenadatapages" />
    </inputs>
    <request_param_translation>
        <request_param galaxy_name="URL_method" remote_name="URL_method" missing="get" />
        <request_param galaxy_name="URL" remote_name="URL" missing="" />
    </request_param_translation>
    <uihints minwidth="800"/>
    <outputs>
        <data name="genomic" format="tabular" label="#echo $URL.rsplit('/',1)[1].rsplit('.',1)[0]+' genomic'" />
    </outputs>
    <options sanitize="False" refresh="True"/>
</tool>