Mercurial > repos > melissacline > ucsc_xena_platform
view runXena.py @ 0:8bb037f88ed2
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author | melissacline |
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date | Tue, 13 Jan 2015 23:37:23 -0500 |
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children | 14aaed60e07b |
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#!/usr/bin/env python # To kick off the script, run the following from the python directory: # PYTHONPATH=`pwd` python testdaemon.py start #standard python libs import logging import os import signal import subprocess import sys import time import traceback import xena_utils as xena #third party libs from daemon import runner from lockfile import LockTimeout class App(): def __init__(self): xenaBaseDir = xena.baseDir() if not os.path.exists(xenaBaseDir): os.mkdir(xenaBaseDir) self.pidfile_path = xenaBaseDir + "/xena-daemon.pid" self.stdin_path = '/dev/null' self.stdout_path = '/dev/null' self.stderr_path = '/dev/null' self.pidfile_timeout = 5 def run(self): while True: #Main code goes here ... #Note that logger level needs to be set to logging.DEBUG before this shows up in the logs xenaCmdline = "java -jar %s -r %s/files -d %s/db -t %s/tmp --logfile %s/xena.log -p %s -H 0.0.0.0 --no-auto" xenaBaseDir = xena.baseDir() xenaCmd = xenaCmdline % (xena.jarPath(), xenaBaseDir, xenaBaseDir, xenaBaseDir, xenaBaseDir, xena.port()) logger.debug("Invoking Xena VM with command %s" % (xenaCmd)) xenaVm = subprocess.call(xenaCmd, shell=True) logger.info("Starting Xena VM") #logger.warn("Warning message") #logger.error("Error message") def processListeningOnPort(portID): cmd = "lsof -t -i :%s -sTCP:LISTEN" % portID pid = subprocess.check_output(cmd, shell=True).rstrip() return(int(pid)) fp = open(sys.argv[2], "w") app = App() logger = logging.getLogger("DaemonLog") logger.setLevel(logging.DEBUG) formatter = logging.Formatter("%(asctime)s - %(name)s - %(levelname)s - %(message)s") handler = logging.FileHandler(xena.baseDir() + "/xena-daemon.log") handler.setFormatter(formatter) logger.addHandler(handler) hostname = subprocess.check_output("hostname -f", shell=True).rstrip() # # Check if there has been a Xena running on this system, and # what its port number is or was. # xenaPort = xena.port() if xenaPort == None: # In this case, no Xena has been running on this sytem. xenaIsRunning = False else: xenaIsRunning = xena.isRunning(xenaPort) #rint "xena running", xenaIsRunning, "port", xenaPort if sys.argv[1] == "status": # # When checking status, if Xena is running, then report that it's running # with hostname and port. If it's not running, then report as such. # if xenaIsRunning: fp.write("Xena VM currently running on %s:%s\n" % (hostname, xenaPort)) fp.write("You can add %s:%s to Xena Data Hub\n" % (hostname, xenaPort)) else: fp.write("Xena VM is not currently running on %s\n" % (hostname)) elif sys.argv[1] == "start": # # When a start command came in, allocate a new port and prepare to start # xena if it's not already running. If it is already running, then # report as such. In either case, close the output file before this # process goes into daemon mode. # if not xenaIsRunning: xenaPort = xena.port(testIfAvailable=True, findNewPort=True) fp.write("Starting Xena VM on %s:%s\n" % (hostname, xenaPort)) fp.write("You can add %s:%s to Xena Data Hub\n" % (hostname, xenaPort)) else: fp.write("Xena VM already running on %s:%s\n" % (hostname, xenaPort)) fp.write("You can add %s:%s to Xena Data Hub\n" % (hostname, xenaPort)) fp.close() elif sys.argv[1] == "stop": # # When stopping Xena, if it's currently running, report that Xena # is being terminated and clean up the port. If it's not running, # report as such. # if xenaIsRunning: fp.write("Terminating Xena VM on %s:%s\n" % (hostname, xenaPort)) else: fp.write("Xena VM is not currently running on %s\n" % (hostname)) else: fp.write(("Error: Unexpected command %s" % sys.argv[1])) # # Here is where the starting and stopping of the Xena daemon takes place. # if sys.argv[1] == "start" or (sys.argv[1] == "stop" and xenaIsRunning): daemon_runner = runner.DaemonRunner(app) # This ensures that the logger file handle does not get closed during daemonization daemon_runner.daemon_context.files_preserve=[handler.stream] try: daemon_runner.do_action() except LockTimeout: # Xena is already running. No need to do anything special, but this # should be separated from the other exceptions. pass except: exc_type, exc_value, exc_traceback = sys.exc_info() lines = traceback.format_exception(exc_type, exc_value, exc_traceback) allLines = ''.join('!! ' + line for line in lines) fp.write("Unsuccessful: error %s\n" % allLines) if sys.argv[1] == "stop": # # If the Xena stop command has been issued, then kill the Xena # process. # xenaPid = processListeningOnPort(xenaPort) logger.debug("Attempting to kill process with PID %d" % xenaPid) os.kill(xenaPid, signal.SIGTERM) if sys.argv[1] != "start": fp.close()