diff ucsc_xenabrowser.xml @ 44:da86478b1d64

clean up strange tools that just a url linkout
author jingchunzhu <jingchunzhu@gmail.com>
date Mon, 27 Jul 2015 15:30:10 -0700
parents 066ae9df2d27
children 47926759295a
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line diff
--- a/ucsc_xenabrowser.xml	Mon Jul 27 12:21:55 2015 -0700
+++ b/ucsc_xenabrowser.xml	Mon Jul 27 15:30:10 2015 -0700
@@ -1,20 +1,7 @@
 <?xml version="1.0"?>
-<tool name="Xena Visualization" id="ucsc_xenabrowser" tool_type="data_source">
-    <description>UCSC Xena Browser visualization</description>
-    <command interpreter="python">ucsc_xena_download.py $genomic $clinical $__app__.config.output_size_limit</command>   
-    <inputs action="https://genome-cancer.soe.ucsc.edu/proj/site/xena/heatmap/" check_values="false" method="get">
-         <display>go to UCSC Xena Browser $GALAXY_URL</display>
-        <param name="GALAXY_URL" type="baseurl" value="/tool_runner" />
-        <param name="tool_id" type="hidden" value="ucsc_xenabrowser" />
+<tool name="Xena Visualization" id="ucsc_xenabrowser" tool_type="data_source" description="UCSC Xena Browser visualization">
+    <inputs action="https://genome-cancer.soe.ucsc.edu/proj/site/xena/heatmap/" >
+      <param name="GALAXY_URL" type="baseurl" value="/tool_runner" />
+      <param name="tool_id" type="hidden" value="ucsc_xenabrowser" />
     </inputs>
-    <request_param_translation>
-        <request_param galaxy_name="URL_method" remote_name="URL_method" missing="get" />
-        <request_param galaxy_name="URL" remote_name="URL" missing="" />
-    </request_param_translation>
-    <uihints minwidth="800"/>
-    <outputs>
-        <data name="genomic" format="tabular" label="#echo $URL.rsplit('/',1)[1].rsplit('.',1)[0]+' genomic'" />
-        <data name="clinical" format="tabular" label="#echo $URL.rsplit('/',1)[1].rsplit('.',1)[0]+' clinical'"/>
-    </outputs>
-    <options sanitize="False" refresh="True"/>
 </tool>