Mercurial > repos > melissacline > ucsc_xena_platform
diff ucsc_xenabrowser.xml @ 44:da86478b1d64
clean up strange tools that just a url linkout
author | jingchunzhu <jingchunzhu@gmail.com> |
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date | Mon, 27 Jul 2015 15:30:10 -0700 |
parents | 066ae9df2d27 |
children | 47926759295a |
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--- a/ucsc_xenabrowser.xml Mon Jul 27 12:21:55 2015 -0700 +++ b/ucsc_xenabrowser.xml Mon Jul 27 15:30:10 2015 -0700 @@ -1,20 +1,7 @@ <?xml version="1.0"?> -<tool name="Xena Visualization" id="ucsc_xenabrowser" tool_type="data_source"> - <description>UCSC Xena Browser visualization</description> - <command interpreter="python">ucsc_xena_download.py $genomic $clinical $__app__.config.output_size_limit</command> - <inputs action="https://genome-cancer.soe.ucsc.edu/proj/site/xena/heatmap/" check_values="false" method="get"> - <display>go to UCSC Xena Browser $GALAXY_URL</display> - <param name="GALAXY_URL" type="baseurl" value="/tool_runner" /> - <param name="tool_id" type="hidden" value="ucsc_xenabrowser" /> +<tool name="Xena Visualization" id="ucsc_xenabrowser" tool_type="data_source" description="UCSC Xena Browser visualization"> + <inputs action="https://genome-cancer.soe.ucsc.edu/proj/site/xena/heatmap/" > + <param name="GALAXY_URL" type="baseurl" value="/tool_runner" /> + <param name="tool_id" type="hidden" value="ucsc_xenabrowser" /> </inputs> - <request_param_translation> - <request_param galaxy_name="URL_method" remote_name="URL_method" missing="get" /> - <request_param galaxy_name="URL" remote_name="URL" missing="" /> - </request_param_translation> - <uihints minwidth="800"/> - <outputs> - <data name="genomic" format="tabular" label="#echo $URL.rsplit('/',1)[1].rsplit('.',1)[0]+' genomic'" /> - <data name="clinical" format="tabular" label="#echo $URL.rsplit('/',1)[1].rsplit('.',1)[0]+' clinical'"/> - </outputs> - <options sanitize="False" refresh="True"/> </tool>