Mercurial > repos > melissacline > ucsc_xena_platform

diff xenaGetDataset.xml @ 46:cdba6c63dce5

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add help
author jingchunzhu
date Wed, 29 Jul 2015 10:26:18 -0700
parents 78d6e6772e30
children bb840cc2603d
line wrap: on
line diff
--- a/xenaGetDataset.xml	Mon Jul 27 15:39:35 2015 -0700
+++ b/xenaGetDataset.xml	Wed Jul 29 10:26:18 2015 -0700
@@ -25,11 +25,11 @@
 	<param type="text" name ="customDataHub" label="Hub url" optional="false"/>
       </when>
     </conditional>  
-    <param type="text" name="dataset" label="Dataset ID" optional="false"/>
+    <param type="text" name="dataset" label="Dataset ID" optional="false" help="How do I find the dataset ID? Tools section-> UCSC Xena Platform ->  Explore Data in Xena:  It takes you to the xena data exploration page. Browser to find the cohort of your interest (e.g. TCGA Lung Adenocarcinoma), then click the cohort link, then find the dataset of your interest (e.g. LUAD exon expression (IlluminaHiSeq) ), click the dataset link to go to its own detailed page. Copy and paste from the dataset ID field." />
   </inputs>
   <outputs>
     <!-- <data format="txt" name="metadataFile" label="${dataset}.json"/> -->
-    <data format="txt" name="dataFile" label="${dataset}" />
+    <data format="tabular" name="dataFile" label="${dataset}" />
   </outputs>
   <help>
     Given the data hub name and the dataset id, download the dataset into this Galaxy. Xena dataset id can be obtained through the Explore Data in Xena tool.