diff xenaAdmin.xml @ 0:8bb037f88ed2

Uploaded

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/xenaAdmin.xml	Tue Jan 13 23:37:23 2015 -0500
@@ -0,0 +1,52 @@
+<tool id="xenaAdmin" name="Xena Administration" version="0.0.2">
+  <description>Administer the Galaxy-embedded Xena: start, check status, stop, backup, restore</description>
+ <requirements>
+   <requirement type="package" version="1.0">installXena</requirement>
+ </requirements>
+  <command interpreter="python">
+    #if $adminAction.actionType == "backup":
+        xena_backup.py ${adminAction.backupDir} $outfile
+    #else:
+        #if $adminAction.actionType == "restore":
+	    xena_restore.py ${adminAction.restoreDir} $outfile
+	#else:
+            runXena.py ${adminAction.actionType} $outfile
+        #end if
+    #end if
+  </command>
+  <inputs>
+    <conditional name="adminAction">
+      <param format="str" type="select" name = "actionType" label="Action">
+	<option value="status">Check Status</option>
+	<option value="start">Start Xena</option>
+	<option value="stop">Stop Xena</option>
+	<option value="backup">Backup the Xena data to an external directory</option>
+	<option value="restore">Restore data to Xena from an external backup directory</option>
+      </param>
+      <when value="backup">
+	<param label="External Directory" type="text" name="backupDir" value="/tmp/xena_files"/>
+      </when>
+      <when value="restore">
+	<param label="Backup Directory" type="text" name="restoreDir" value="/tmp/xena_files"/>
+      </when>
+      <when value="status"/>
+      <when value="start"/>
+      <when value="stop"/>
+    </conditional>
+  </inputs>
+  <outputs>
+    <data format="txt" name="outfile"/>
+  </outputs>
+ <help>
+
+**Xena Administration**      
+
+Administer the Galaxy-embedded Xena by starting it, stopping it or checking its status.  If you start Xena, or if you check the status while Xena is running, the output will indicate a URL for the Xena server that you can enter in the Xena Data Hub tool.  After you add a new data hub with this URL, and select it, you will be able to see the data from this Xena in the Xena browser.
+
+With this tool, you can also  backup the data from your Galaxy-embedded Xena to an external directory on the same computer, and can restore data from a previous backup into the Xena database.  If you wish to restore data, Xena must be running first.
+   
+  </help>
+</tool>
+
+
+