Mercurial > repos > melissacline > ucsc_xena_platform

diff xena_delete.py @ 2:6eeb3ca663fb

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Fixed dataset delete bugs (the full pathname was needed) plus changed xena_import to give a checkbox for turning on column normalization
author melissacline
date Wed, 14 Jan 2015 15:21:09 -0800
parents 8bb037f88ed2
children 98b498545a52
line wrap: on
line diff
--- a/xena_delete.py	Wed Jan 14 12:47:23 2015 -0800
+++ b/xena_delete.py	Wed Jan 14 15:21:09 2015 -0800
@@ -29,9 +29,11 @@
     # is generated, output a traceback and exit with nonzero status.  If
     # no exception was generated, indicate a successful import and exit
     # with zero status.
-    xenaDeleteCmd = "java -jar %s --delete %s -p %s" % (xena.jarPath(),
-                                                        args.datasetName,
-                                                        xena.port())
+    xenaDeleteCmd = "java -jar %s --delete %s/%s -p %s" % (xena.jarPath(),
+                                                           xenaFileDir,
+                                                           args.datasetName,
+                                                           xena.port())
+    print "Issuing command", xenaDeleteCmd
     try:
         subprocess.call(xenaDeleteCmd, shell=True)
     except: