comparison ucsc_xenabrowser.xml @ 15:c298bb05640e

Changed the base URL for xena utilities
author melissacline
date Thu, 23 Apr 2015 08:45:54 -0700
parents 8bb037f88ed2
children 154a9b440b63
comparison
equal deleted inserted replaced
14:f267971d2b0e 15:c298bb05640e
5 initial response ( in addition to 'URL' ) will be encoded and appended to URL and a post will be performed. 5 initial response ( in addition to 'URL' ) will be encoded and appended to URL and a post will be performed.
6 --> 6 -->
7 <tool name="UCSC Xena Browser" id="ucsc_xenabrowser" tool_type="data_source"> 7 <tool name="UCSC Xena Browser" id="ucsc_xenabrowser" tool_type="data_source">
8 <description>Run the UCSC Xena Browser as a Galaxy tool.</description> 8 <description>Run the UCSC Xena Browser as a Galaxy tool.</description>
9 <command interpreter="python">ucsc_xena_download.py $genomic $clinical $__app__.config.output_size_limit</command> 9 <command interpreter="python">ucsc_xena_download.py $genomic $clinical $__app__.config.output_size_limit</command>
10 <inputs action="https://genome-cancer.ucsc.edu/proj/site/hgHeatmap-cavm/" check_values="false" method="get"> 10 <inputs action="https://genome-cancer.soe.ucsc.edu/proj/site/xena/heatmap" check_values="false" method="get">
11 <display>go to UCSC Xena Browser $GALAXY_URL</display> 11 <display>go to UCSC Xena Browser $GALAXY_URL</display>
12 <param name="GALAXY_URL" type="baseurl" value="/tool_runner" /> 12 <param name="GALAXY_URL" type="baseurl" value="/tool_runner" />
13 <param name="tool_id" type="hidden" value="ucsc_xenabrowser" /> 13 <param name="tool_id" type="hidden" value="ucsc_xenabrowser" />
14 </inputs> 14 </inputs>
15 <request_param_translation> 15 <request_param_translation>