Mercurial > repos > melissacline > ucsc_xena_platform
comparison xena_delete.py @ 3:98b498545a52
Fixed xena_delete to delete the files from the Xena files directory as well as from the database
| author | melissacline |
|---|---|
| date | Wed, 14 Jan 2015 16:35:12 -0800 |
| parents | 6eeb3ca663fb |
| children |
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| 2:6eeb3ca663fb | 3:98b498545a52 |
|---|---|
| 31 # with zero status. | 31 # with zero status. |
| 32 xenaDeleteCmd = "java -jar %s --delete %s/%s -p %s" % (xena.jarPath(), | 32 xenaDeleteCmd = "java -jar %s --delete %s/%s -p %s" % (xena.jarPath(), |
| 33 xenaFileDir, | 33 xenaFileDir, |
| 34 args.datasetName, | 34 args.datasetName, |
| 35 xena.port()) | 35 xena.port()) |
| 36 print "Issuing command", xenaDeleteCmd | |
| 37 try: | 36 try: |
| 38 subprocess.call(xenaDeleteCmd, shell=True) | 37 subprocess.call(xenaDeleteCmd, shell=True) |
| 39 except: | 38 except: |
| 40 exc_type, exc_value, exc_traceback = sys.exc_info() | 39 exc_type, exc_value, exc_traceback = sys.exc_info() |
| 41 lines = traceback.format_exception(exc_type, exc_value, exc_traceback) | 40 lines = traceback.format_exception(exc_type, exc_value, exc_traceback) |
| 43 fp2.write("Unsuccessful: error %s\n" % allLines) | 42 fp2.write("Unsuccessful: error %s\n" % allLines) |
| 44 fp2.close() | 43 fp2.close() |
| 45 sys.exit(-1) | 44 sys.exit(-1) |
| 46 else: | 45 else: |
| 47 fp2.write( "Dataset %s deleted\n" % args.datasetName) | 46 fp2.write( "Dataset %s deleted\n" % args.datasetName) |
| 47 dataPathname = xenaFileDir + "/" + args.datasetName | |
| 48 if os.path.exists(dataPathname): | |
| 49 os.unlink(dataPathname) | |
| 50 metadataPathname = dataPathname + ".json" | |
| 51 if os.path.exists(metadataPathname): | |
| 52 os.unlink(metadataPathname) | |
| 48 fp2.close() | 53 fp2.close() |
| 49 sys.exit(0) | 54 sys.exit(0) |
| 50 | 55 |
| 51 | 56 |
| 52 if __name__ == "__main__": | 57 if __name__ == "__main__": |