Mercurial > repos > melissacline > ucsc_xena_platform
comparison xena_import.xml @ 2:6eeb3ca663fb
Fixed dataset delete bugs (the full pathname was needed) plus changed xena_import to give a checkbox for turning on column normalization
| author | melissacline |
|---|---|
| date | Wed, 14 Jan 2015 15:21:09 -0800 |
| parents | 8bb037f88ed2 |
| children | 1707e82d55bc c5b71ce5f7b1 |
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| 1:ca4510434eda | 2:6eeb3ca663fb |
|---|---|
| 21 #if $source.label | 21 #if $source.label |
| 22 --label "${source.label}" | 22 --label "${source.label}" |
| 23 #else | 23 #else |
| 24 --label "${xenaInputData.name}" | 24 --label "${xenaInputData.name}" |
| 25 #end if | 25 #end if |
| 26 #end if | |
| 27 #if $colNormalization: | |
| 28 --colNormalization 1 | |
| 26 #end if | 29 #end if |
| 27 </command> | 30 </command> |
| 28 <inputs> | 31 <inputs> |
| 29 <param format="data" type="data" name="xenaInputData" label="Data to import to Xena" optional="false"/> | 32 <param format="data" type="data" name="xenaInputData" label="Data to import to Xena" optional="false"/> |
| 30 <conditional name="source"> | 33 <conditional name="source"> |
| 110 <when value="mutationVector"/> | 113 <when value="mutationVector"/> |
| 111 </conditional> | 114 </conditional> |
| 112 <param type="text" name="label" label="Display Name (Optional)" optional="true"/> | 115 <param type="text" name="label" label="Display Name (Optional)" optional="true"/> |
| 113 </when> | 116 </when> |
| 114 </conditional> | 117 </conditional> |
| 118 <param type="boolean" name="colNormalization" label="Apply Column Normalization" checked="false"/> | |
| 115 </inputs> | 119 </inputs> |
| 116 <outputs> | 120 <outputs> |
| 117 <data format="txt" name="outfile"/> | 121 <data format="txt" name="outfile"/> |
| 118 </outputs> | 122 </outputs> |
| 119 <help> | 123 <help> |