Mercurial > repos > melissacline > ucsc_xena_platform
comparison runXena.py @ 18:154a9b440b63
Updated the xena jar to version 14, updated the URL of the Xena pages
| author | melissacline |
|---|---|
| date | Tue, 02 Jun 2015 14:55:55 -0700 |
| parents | 14aaed60e07b |
| children | 77f5d8cbac77 |
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| 17:6785e729c7ad | 18:154a9b440b63 |
|---|---|
| 32 | 32 |
| 33 def run(self): | 33 def run(self): |
| 34 while True: | 34 while True: |
| 35 #Main code goes here ... | 35 #Main code goes here ... |
| 36 #Note that logger level needs to be set to logging.DEBUG before this shows up in the logs | 36 #Note that logger level needs to be set to logging.DEBUG before this shows up in the logs |
| 37 xenaCmdline = "java -jar %s -r %s/files -d %s/db -t %s/tmp --logfile %s/xena.log -p %s -H 0.0.0.0 --no-auto" | 37 xenaCmdline = "java -jar %s -r %s/files -d %s/db -t %s/tmp --logfile %s/xena.log -p %s -H 0.0.0.0" |
| 38 xenaBaseDir = xena.baseDir() | 38 xenaBaseDir = xena.baseDir() |
| 39 xenaCmd = xenaCmdline % (xena.jarPath(), xenaBaseDir, | 39 xenaCmd = xenaCmdline % (xena.jarPath(), xenaBaseDir, |
| 40 xenaBaseDir, xenaBaseDir, | 40 xenaBaseDir, xenaBaseDir, |
| 41 xenaBaseDir, xena.port()) | 41 xenaBaseDir, xena.port()) |
| 42 logger.debug("Invoking Xena VM with command %s" % (xenaCmd)) | 42 logger.debug("Invoking Xena VM with command %s" % (xenaCmd)) |