Cavm 0.17.0
Cancer Analytics Virtual Machine
cavm.h2
Public variables and functions:
- ->H2Db
- bin-offset
- collect-fields
- concat-field-bins
- create-db
- create-xenadb
- dataset-id-by-name
- delete-dataset
- delete-rows-by-field-cmd
- do-command-while-updates
- eval-sql
- fetch-genes
- fetch-indexed
- fetch-position
- fetch-rows
- field-genes
- field-genes-by-row
- field-position
- field-position-by-row
- has-codes?
- has-genes?
- has-index?
- has-position?
- map->H2Db
- score-decode
- score-encode
- score-encode-orig
- set-tmp-dir!
- trunc
- update-cache
- update-codes-cache
- with-delete-status
- with-load-status
cgdata.core
Public variables and functions:
- category-field
- columns-from-header
- detect-cgdata
- detect-tsv
- drop-hash
- drop-indexes
- dup-indexes
- enforce-mutation-fields
- field-spec
- find-position-field
- find-position-fields
- fix-json
- fix-vec
- gene-pred-file
- genomic-segment-columns
- genomic-segment-file
- guess-column-type
- intern-coll
- intern-csv-coll
- map-invert
- matrix-data-parse
- matrix-file
- mutation-columns
- mutation-file
- mutation-required-columns
- normalize-chrom
- normalize-column-name
- pick-header
- probemap-columns
- probemap-file
- range-from
- references
- strcpy
- tsv-rows