Table of ContentsΒΆ

  • Introduction to UCSC Xena
    • Overview
    • Deployment scenarios
      • Single user
      • Organization
      • Cloud
    • Data Model
      • cgdata
      • The Xena Data Model
        • Field types
          • Float
          • Category
          • Gene
          • Position
        • Dataset Meta Data
          • probeMap
          • cohort
    • Dataset Loading
      • Input Formats
  • Command Line Tool
    • Overview
      • --no-serve
      • --no-auto
      • --host
      • --port
      • --load [file ..]
      • --force
      • --json
      • --database
      • --logfile
      • --root
  • Web API
    • Relational Queries
    • Analytic Queries
    • Scheme Overview
      • Special Forms
        • fn
        • quote
        • let
        • if
      • Data Types
      • Functions
        • Math
        • Functional methods
        • Data Access
        • SQL Functions
  • Xena Web Console
  • UCSC Xena Server Design
    • Modules For Data Ingestion
    • Modules For Data Serving
    • Database backend: h2.clj
    • File readers, readers.clj
      • CGData
      • CGData probemap references
  • Xena Database Schema
    • Tables
      • dataset
      • field
      • field-score
      • scores
      • feature
      • code
      • field-position
      • field-gene
    • Schema In Detail
  • Client Libraries
    • Python
  • Internal API docs

Related Topics

  • Documentation overview
    • Next: Introduction to UCSC Xena

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