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1 <tool id="xenaAdmin" name="Xena Administration" version="0.0.2">
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2 <description>Administer the Galaxy-embedded Xena: start, check status, stop, backup, restore</description>
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3 <requirements>
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4 <requirement type="package" version="1.0">installXena</requirement>
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5 </requirements>
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6 <command interpreter="python">
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7 #if $adminAction.actionType == "backup":
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8 xena_backup.py ${adminAction.backupDir} $outfile
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9 #else:
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10 #if $adminAction.actionType == "restore":
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11 xena_restore.py ${adminAction.restoreDir} $outfile
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12 #else:
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13 runXena.py ${adminAction.actionType} $outfile
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14 #end if
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15 #end if
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16 </command>
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17 <inputs>
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18 <conditional name="adminAction">
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19 <param format="str" type="select" name = "actionType" label="Action">
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20 <option value="status">Check Status</option>
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21 <option value="start">Start Xena</option>
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22 <option value="stop">Stop Xena</option>
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23 <option value="backup">Backup the Xena data to an external directory</option>
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24 <option value="restore">Restore data to Xena from an external backup directory</option>
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25 </param>
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26 <when value="backup">
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27 <param label="External Directory" type="text" name="backupDir" value="/tmp/xena_files"/>
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28 </when>
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29 <when value="restore">
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30 <param label="Backup Directory" type="text" name="restoreDir" value="/tmp/xena_files"/>
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31 </when>
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32 <when value="status"/>
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33 <when value="start"/>
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34 <when value="stop"/>
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35 </conditional>
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36 </inputs>
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37 <outputs>
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38 <data format="txt" name="outfile"/>
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39 </outputs>
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40 <help>
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41
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42 **Xena Administration**
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43
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44 Administer the Galaxy-embedded Xena by starting it, stopping it or checking its status. If you start Xena, or if you check the status while Xena is running, the output will indicate a URL for the Xena server that you can enter in the Xena Data Hub tool. After you add a new data hub with this URL, and select it, you will be able to see the data from this Xena in the Xena browser.
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45
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46 With this tool, you can also backup the data from your Galaxy-embedded Xena to an external directory on the same computer, and can restore data from a previous backup into the Xena database. If you wish to restore data, Xena must be running first.
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47
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48 </help>
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49 </tool>
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50
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51
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