Mercurial > repos > melissacline > ucsc_xena_platform
annotate ucsc_xena_datapages.xml @ 10:14aaed60e07b
Removed the obsolete --no-auto switch when invoking xena
| author | melissacline |
|---|---|
| date | Mon, 16 Mar 2015 18:20:24 -0700 |
| parents | 87d4ed062e27 |
| children | 80e588115eae |
| rev | line source |
|---|---|
| 0 | 1 <?xml version="1.0"?> |
| 2 <!-- | |
| 3 If the value of 'URL_method' is 'get', the request will consist of the value of 'URL' coming back in | |
| 4 the initial response. If value of 'URL_method' is 'post', any additional params coming back in the | |
| 5 initial response ( in addition to 'URL' ) will be encoded and appended to URL and a post will be performed. | |
| 6 --> | |
| 7 <tool name="Explore Data in Xena" id="ucsc_xenadatapages" tool_type="data_source"> | |
| 8 <description>Browse the UCSC Xena Data Pages.</description> | |
| 9 <command interpreter="python">ucsc_xena_download.py $genomic $__app__.config.output_size_limit</command> | |
|
7
87d4ed062e27
Changed the URL for the Xena data pages to the public URL
melissacline
parents:
0
diff
changeset
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10 <inputs action="https://genome-cancer.ucsc.edu/proj/site/hgHeatmap-cavm/datapages" check_values="false" method="get"> |
| 0 | 11 <display>Explore the data in Xena $GALAXY_URL</display> |
| 12 <param name="GALAXY_URL" type="baseurl" value="/tool_runner" /> | |
| 13 <param name="tool_id" type="hidden" value="ucsc_xenadatapages" /> | |
| 14 </inputs> | |
| 15 <request_param_translation> | |
| 16 <request_param galaxy_name="URL_method" remote_name="URL_method" missing="get" /> | |
| 17 <request_param galaxy_name="URL" remote_name="URL" missing="" /> | |
| 18 </request_param_translation> | |
| 19 <uihints minwidth="800"/> | |
| 20 <outputs> | |
| 21 <data name="genomic" format="tabular" label="#echo $URL.rsplit('/',1)[1].rsplit('.',1)[0]+' genomic'" /> | |
| 22 </outputs> | |
| 23 <options sanitize="False" refresh="True"/> | |
| 24 </tool> |