Mercurial > repos > melissacline > ucsc_cancer_utilities

changeset 37:e81019e3ac99

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Updated synapseGetDataset to look at the filename rather than the (no longer existant) content type field to determine if the data is in zip format
author melissacline
date Mon, 27 Jul 2015 16:29:24 -0700
parents ab161b5ac9cc
children 84eb11adc22f
files synapseGetDataset.py
diffstat 1 files changed, 2 insertions(+), 1 deletions(-) [+]
line wrap: on
line diff
--- a/synapseGetDataset.py	Mon Jul 27 15:55:22 2015 -0700
+++ b/synapseGetDataset.py	Mon Jul 27 16:29:24 2015 -0700
@@ -3,6 +3,7 @@
 
 import argparse
 import json
+import re
 import synapseclient
 import sys
 import zipfile
@@ -23,7 +24,7 @@
     fp.close()
 
 def saveData(entity, dataPathname):
-    if entity.properties['contentType'] == "application/zip":
+    if re.search("\.zip$", entity.path):
         zf = zipfile.ZipFile(entity.path)
         if len(zf.namelist()) > 1:
             raise InputError(len(zf.namelist())), "Error: more than one input file"