# HG changeset patch # User jingchunzhu # Date 1439527743 25200 # Node ID ebf3bc09c383757bf98db58652b99e7402e3a8f0 # Parent e2627dcbd8b9fd431b544e1c552632b324b32966 add snpEff code diff -r e2627dcbd8b9 -r ebf3bc09c383 snpEff/snpEff.config --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/snpEff/snpEff.config Thu Aug 13 21:49:03 2015 -0700 @@ -0,0 +1,77647 @@ + +#------------------------------------------------------------------------------- +# +# SnpEff configuration file +# +# Pablo Cingolani +#------------------------------------------------------------------------------- + +#--- +# Databases are stored here +# E.g.: Information for 'hg19' is stored in data.dir/hg19/ +# +# You can use tilde ('~') as first character to refer to your home directory. +# Also, a non-absolute path will be relative to config's file dir +# +#--- +data.dir = ./data/ + +#--- +# Database repository: A URL to the server where you can download databases (command: 'snpEff download dbName') +#--- +database.repository = https://snpeff-data.galaxyproject.org/databases + +#--- +# Latest version numbers. Check here if there is an update. +#--- +versions.url = http://snpeff.sourceforge.net/versions.txt + +#------------------------------------------------------------------------------- +# Third party databases +#------------------------------------------------------------------------------- + +# Databases for human GRCh38 (hg38) + +database.local.clinvar = ./db/GRCh38/clinvar/clinvar-latest.vcf.gz +database.repository.clinvar = ftp://ftp.ncbi.nlm.nih.gov/pub/clinvar/vcf_GRCh38/clinvar-latest.vcf.gz + +database.local.dbsnp = ./db/GRCh38/dbSnp/dbSnp.vcf.gz +database.repository.dbsnp = ftp://ftp.ncbi.nih.gov/snp/organisms/human_9606/VCF/00-All.vcf.gz + +# # Databases for human GRCh37 (hg19) +# # Note: You must use this section if you are using old human genome +# database.local.clinvar = ./db/GRCh37/clinvar/clinvar-latest.vcf.gz +# database.repository.clinvar = ftp://ftp.ncbi.nlm.nih.gov/pub/clinvar/vcf_GRCh37/clinvar-latest.vcf.gz +# +# database.local.dbsnp = ./db/GRCh37/dbSnp/ +# database.repository.dbsnp = ftp://ftp.ncbi.nih.gov/snp/organisms/human_9606_b141_GRCh37p13/VCF/ +# +# database.local.gwascatalog = ./db/GRCh37/gwasCatalog/gwascatalog.txt +# database.repository.gwascatalog = http://www.genome.gov/admin/gwascatalog.txt + +#------------------------------------------------------------------------------- +# Loss of function (LOF) +#------------------------------------------------------------------------------- + +# It is assumed that even with a protein coding change at the +# last 5% of the protein, the protein could still be functional. +lof.ignoreProteinCodingAfter : 0.95 + +# It is assumed that even with a protein coding change at the +# first 5% of the protein: +# "..suggesting some disrupted transcripts are +# rescued by transcriptional reinitiation at an +# alternative start codon." +lof.ignoreProteinCodingBefore : 0.05 + +# Larger deletions removing either the first exon or more than +# 50% of the protein-coding sequence of the affected transcript +lof.deleteProteinCodingBases : 0.50 + +#------------------------------------------------------------------------------- +# Codon tables +# +# Format: It's a comma separated "codon/aminoAcid[+*]" list +# Where 'codon' is in uppper case, aminoAcid is a one letter +# code, '+' denotes start codon and '*' denotes stop codon. +# +# References: http://www.ncbi.nlm.nih.gov/Taxonomy/Utils/wprintgc.cgi +# ftp://ftp.ncbi.nih.gov/entrez/misc/data/gc.prt +#------------------------------------------------------------------------------- + +codon.Standard : TTT/F, TTC/F, TTA/L, TTG/L+, TCT/S, TCC/S, TCA/S, TCG/S, TAT/Y, TAC/Y, TAA/*, TAG/*, TGT/C, TGC/C, TGA/*, TGG/W, CTT/L, CTC/L, CTA/L, CTG/L+, CCT/P, CCC/P, CCA/P, CCG/P, CAT/H, CAC/H, CAA/Q, CAG/Q, CGT/R, CGC/R, CGA/R, CGG/R, ATT/I, ATC/I, ATA/I, ATG/M+, ACT/T, ACC/T, ACA/T, ACG/T, AAT/N, AAC/N, AAA/K, AAG/K, AGT/S, AGC/S, AGA/R, AGG/R, GTT/V, GTC/V, GTA/V, GTG/V, GCT/A, GCC/A, GCA/A, GCG/A, GAT/D, GAC/D, GAA/E, GAG/E, GGT/G, GGC/G, GGA/G, GGG/G +codon.Vertebrate_Mitochondrial : TTT/F, TTC/F, TTA/L, TTG/L, TCT/S, TCC/S, TCA/S, TCG/S, TAT/Y, TAC/Y, TAA/*, TAG/*, TGT/C, TGC/C, TGA/W, TGG/W, CTT/L, CTC/L, CTA/L, CTG/L, CCT/P, CCC/P, CCA/P, CCG/P, CAT/H, CAC/H, CAA/Q, CAG/Q, CGT/R, CGC/R, CGA/R, CGG/R, ATT/I+, ATC/I+, ATA/M+, ATG/M+, ACT/T, ACC/T, ACA/T, ACG/T, AAT/N, AAC/N, AAA/K, AAG/K, AGT/S, AGC/S, AGA/*, AGG/*, GTT/V, GTC/V, GTA/V, GTG/V+, GCT/A, GCC/A, GCA/A, GCG/A, GAT/D, GAC/D, GAA/E, GAG/E, GGT/G, GGC/G, GGA/G, GGG/G +codon.Yeast_Mitochondrial : TTT/F, TTC/F, TTA/L, TTG/L, TCT/S, TCC/S, TCA/S, TCG/S, TAT/Y, TAC/Y, TAA/*, TAG/*, TGT/C, TGC/C, TGA/W, TGG/W, CTT/T, CTC/T, CTA/T, CTG/T, CCT/P, CCC/P, CCA/P, CCG/P, CAT/H, CAC/H, CAA/Q, CAG/Q, CGT/R, CGC/R, CGA/R, CGG/R, ATT/I, ATC/I, ATA/M+, ATG/M+, ACT/T, ACC/T, ACA/T, ACG/T, AAT/N, AAC/N, AAA/K, AAG/K, AGT/S, AGC/S, AGA/R, AGG/R, GTT/V, GTC/V, GTA/V, GTG/V, GCT/A, GCC/A, GCA/A, GCG/A, GAT/D, GAC/D, GAA/E, GAG/E, GGT/G, GGC/G, GGA/G, GGG/G +codon.Mold_Mitochondrial : TTT/F, TTC/F, TTA/L+, TTG/L+, TCT/S, TCC/S, TCA/S, TCG/S, TAT/Y, TAC/Y, TAA/*, TAG/*, TGT/C, TGC/C, TGA/W, TGG/W, CTT/L, CTC/L, CTA/L, CTG/L+, CCT/P, CCC/P, CCA/P, CCG/P, CAT/H, CAC/H, CAA/Q, CAG/Q, CGT/R, CGC/R, CGA/R, CGG/R, ATT/I+, ATC/I+, ATA/I+, ATG/M+, ACT/T, ACC/T, ACA/T, ACG/T, AAT/N, AAC/N, AAA/K, AAG/K, AGT/S, AGC/S, AGA/R, AGG/R, GTT/V, GTC/V, GTA/V, GTG/V+, GCT/A, GCC/A, GCA/A, GCG/A, GAT/D, GAC/D, GAA/E, GAG/E, GGT/G, GGC/G, GGA/G, GGG/G +codon.Protozoan_Mitochondrial : TTT/F, TTC/F, TTA/L+, TTG/L+, TCT/S, TCC/S, TCA/S, TCG/S, TAT/Y, TAC/Y, TAA/*, TAG/*, TGT/C, TGC/C, TGA/W, TGG/W, CTT/L, CTC/L, CTA/L, CTG/L+, CCT/P, CCC/P, CCA/P, CCG/P, CAT/H, CAC/H, CAA/Q, CAG/Q, CGT/R, CGC/R, CGA/R, CGG/R, ATT/I+, ATC/I+, ATA/I+, ATG/M+, ACT/T, ACC/T, ACA/T, ACG/T, AAT/N, AAC/N, AAA/K, AAG/K, AGT/S, AGC/S, AGA/R, AGG/R, GTT/V, GTC/V, GTA/V, GTG/V+, GCT/A, GCC/A, GCA/A, GCG/A, GAT/D, GAC/D, GAA/E, GAG/E, GGT/G, GGC/G, GGA/G, GGG/G +codon.Coelenterate : TTT/F, TTC/F, TTA/L+, TTG/L+, TCT/S, TCC/S, TCA/S, TCG/S, TAT/Y, TAC/Y, TAA/*, TAG/*, TGT/C, TGC/C, TGA/W, TGG/W, CTT/L, CTC/L, CTA/L, CTG/L+, CCT/P, CCC/P, CCA/P, CCG/P, CAT/H, CAC/H, CAA/Q, CAG/Q, CGT/R, CGC/R, CGA/R, CGG/R, ATT/I+, ATC/I+, ATA/I+, ATG/M+, ACT/T, ACC/T, ACA/T, ACG/T, AAT/N, AAC/N, AAA/K, AAG/K, AGT/S, AGC/S, AGA/R, AGG/R, GTT/V, GTC/V, GTA/V, GTG/V+, GCT/A, GCC/A, GCA/A, GCG/A, GAT/D, GAC/D, GAA/E, GAG/E, GGT/G, GGC/G, GGA/G, GGG/G +codon.Mitochondrial : TTT/F, TTC/F, TTA/L+, TTG/L+, TCT/S, TCC/S, TCA/S, TCG/S, TAT/Y, TAC/Y, TAA/*, TAG/*, TGT/C, TGC/C, TGA/W, TGG/W, CTT/L, CTC/L, CTA/L, CTG/L+, CCT/P, CCC/P, CCA/P, CCG/P, CAT/H, CAC/H, CAA/Q, CAG/Q, CGT/R, CGC/R, CGA/R, CGG/R, ATT/I+, ATC/I+, ATA/I+, ATG/M+, ACT/T, ACC/T, ACA/T, ACG/T, AAT/N, AAC/N, AAA/K, AAG/K, AGT/S, AGC/S, AGA/R, AGG/R, GTT/V, GTC/V, GTA/V, GTG/V+, GCT/A, GCC/A, GCA/A, GCG/A, GAT/D, GAC/D, GAA/E, GAG/E, GGT/G, GGC/G, GGA/G, GGG/G +codon.Mycoplasma : TTT/F, TTC/F, TTA/L+, TTG/L+, TCT/S, TCC/S, TCA/S, TCG/S, TAT/Y, TAC/Y, TAA/*, TAG/*, TGT/C, TGC/C, TGA/W, TGG/W, CTT/L, CTC/L, CTA/L, CTG/L+, CCT/P, CCC/P, CCA/P, CCG/P, CAT/H, CAC/H, CAA/Q, CAG/Q, CGT/R, CGC/R, CGA/R, CGG/R, ATT/I+, ATC/I+, ATA/I+, ATG/M+, ACT/T, ACC/T, ACA/T, ACG/T, AAT/N, AAC/N, AAA/K, AAG/K, AGT/S, AGC/S, AGA/R, AGG/R, GTT/V, GTC/V, GTA/V, GTG/V+, GCT/A, GCC/A, GCA/A, GCG/A, GAT/D, GAC/D, GAA/E, GAG/E, GGT/G, GGC/G, GGA/G, GGG/G +codon.Spiroplasma : TTT/F, TTC/F, TTA/L+, TTG/L+, TCT/S, TCC/S, TCA/S, TCG/S, TAT/Y, TAC/Y, TAA/*, TAG/*, TGT/C, TGC/C, TGA/W, TGG/W, CTT/L, CTC/L, CTA/L, CTG/L+, CCT/P, CCC/P, CCA/P, CCG/P, CAT/H, CAC/H, CAA/Q, CAG/Q, CGT/R, CGC/R, CGA/R, CGG/R, ATT/I+, ATC/I+, ATA/I+, ATG/M+, ACT/T, ACC/T, ACA/T, ACG/T, AAT/N, AAC/N, AAA/K, AAG/K, AGT/S, AGC/S, AGA/R, AGG/R, GTT/V, GTC/V, GTA/V, GTG/V+, GCT/A, GCC/A, GCA/A, GCG/A, GAT/D, GAC/D, GAA/E, GAG/E, GGT/G, GGC/G, GGA/G, GGG/G +codon.Invertebrate_Mitochondrial : TTT/F, TTC/F, TTA/L, TTG/L+, TCT/S, TCC/S, TCA/S, TCG/S, TAT/Y, TAC/Y, TAA/*, TAG/*, TGT/C, TGC/C, TGA/W, TGG/W, CTT/L, CTC/L, CTA/L, CTG/L, CCT/P, CCC/P, CCA/P, CCG/P, CAT/H, CAC/H, CAA/Q, CAG/Q, CGT/R, CGC/R, CGA/R, CGG/R, ATT/I+, ATC/I+, ATA/M+, ATG/M+, ACT/T, ACC/T, ACA/T, ACG/T, AAT/N, AAC/N, AAA/K, AAG/K, AGT/S, AGC/S, AGA/S, AGG/S, GTT/V, GTC/V, GTA/V, GTG/V+, GCT/A, GCC/A, GCA/A, GCG/A, GAT/D, GAC/D, GAA/E, GAG/E, GGT/G, GGC/G, GGA/G, GGG/G +codon.Ciliate_Nuclear : TTT/F, TTC/F, TTA/L, TTG/L, TCT/S, TCC/S, TCA/S, TCG/S, TAT/Y, TAC/Y, TAA/Q, TAG/Q, TGT/C, TGC/C, TGA/*, TGG/W, CTT/L, CTC/L, CTA/L, CTG/L, CCT/P, CCC/P, CCA/P, CCG/P, CAT/H, CAC/H, CAA/Q, CAG/Q, CGT/R, CGC/R, CGA/R, CGG/R, ATT/I, ATC/I, ATA/I, ATG/M+, ACT/T, ACC/T, ACA/T, ACG/T, AAT/N, AAC/N, AAA/K, AAG/K, AGT/S, AGC/S, AGA/R, AGG/R, GTT/V, GTC/V, GTA/V, GTG/V, GCT/A, GCC/A, GCA/A, GCG/A, GAT/D, GAC/D, GAA/E, GAG/E, GGT/G, GGC/G, GGA/G, GGG/G +codon.Dasycladacean_Nuclear : TTT/F, TTC/F, TTA/L, TTG/L, TCT/S, TCC/S, TCA/S, TCG/S, TAT/Y, TAC/Y, TAA/Q, TAG/Q, TGT/C, TGC/C, TGA/*, TGG/W, CTT/L, CTC/L, CTA/L, CTG/L, CCT/P, CCC/P, CCA/P, CCG/P, CAT/H, CAC/H, CAA/Q, CAG/Q, CGT/R, CGC/R, CGA/R, CGG/R, ATT/I, ATC/I, ATA/I, ATG/M+, ACT/T, ACC/T, ACA/T, ACG/T, AAT/N, AAC/N, AAA/K, AAG/K, AGT/S, AGC/S, AGA/R, AGG/R, GTT/V, GTC/V, GTA/V, GTG/V, GCT/A, GCC/A, GCA/A, GCG/A, GAT/D, GAC/D, GAA/E, GAG/E, GGT/G, GGC/G, GGA/G, GGG/G +codon.Hexamita_Nuclear : TTT/F, TTC/F, TTA/L, TTG/L, TCT/S, TCC/S, TCA/S, TCG/S, TAT/Y, TAC/Y, TAA/Q, TAG/Q, TGT/C, TGC/C, TGA/*, TGG/W, CTT/L, CTC/L, CTA/L, CTG/L, CCT/P, CCC/P, CCA/P, CCG/P, CAT/H, CAC/H, CAA/Q, CAG/Q, CGT/R, CGC/R, CGA/R, CGG/R, ATT/I, ATC/I, ATA/I, ATG/M+, ACT/T, ACC/T, ACA/T, ACG/T, AAT/N, AAC/N, AAA/K, AAG/K, AGT/S, AGC/S, AGA/R, AGG/R, GTT/V, GTC/V, GTA/V, GTG/V, GCT/A, GCC/A, GCA/A, GCG/A, GAT/D, GAC/D, GAA/E, GAG/E, GGT/G, GGC/G, GGA/G, GGG/G +codon.Echinoderm_Mitochondrial : TTT/F, TTC/F, TTA/L, TTG/L, TCT/S, TCC/S, TCA/S, TCG/S, TAT/Y, TAC/Y, TAA/*, TAG/*, TGT/C, TGC/C, TGA/W, TGG/W, CTT/L, CTC/L, CTA/L, CTG/L, CCT/P, CCC/P, CCA/P, CCG/P, CAT/H, CAC/H, CAA/Q, CAG/Q, CGT/R, CGC/R, CGA/R, CGG/R, ATT/I, ATC/I, ATA/I, ATG/M+, ACT/T, ACC/T, ACA/T, ACG/T, AAT/N, AAC/N, AAA/N, AAG/K, AGT/S, AGC/S, AGA/S, AGG/S, GTT/V, GTC/V, GTA/V, GTG/V+, GCT/A, GCC/A, GCA/A, GCG/A, GAT/D, GAC/D, GAA/E, GAG/E, GGT/G, GGC/G, GGA/G, GGG/G +codon.Flatworm_Mitochondrial : TTT/F, TTC/F, TTA/L, TTG/L, TCT/S, TCC/S, TCA/S, TCG/S, TAT/Y, TAC/Y, TAA/*, TAG/*, TGT/C, TGC/C, TGA/W, TGG/W, CTT/L, CTC/L, CTA/L, CTG/L, CCT/P, CCC/P, CCA/P, CCG/P, CAT/H, CAC/H, CAA/Q, CAG/Q, CGT/R, CGC/R, CGA/R, CGG/R, ATT/I, ATC/I, ATA/I, ATG/M+, ACT/T, ACC/T, ACA/T, ACG/T, AAT/N, AAC/N, AAA/N, AAG/K, AGT/S, AGC/S, AGA/S, AGG/S, GTT/V, GTC/V, GTA/V, GTG/V+, GCT/A, GCC/A, GCA/A, GCG/A, GAT/D, GAC/D, GAA/E, GAG/E, GGT/G, GGC/G, GGA/G, GGG/G +codon.Euplotid_Nuclear : TTT/F, TTC/F, TTA/L, TTG/L, TCT/S, TCC/S, TCA/S, TCG/S, TAT/Y, TAC/Y, TAA/*, TAG/*, TGT/C, TGC/C, TGA/C, TGG/W, CTT/L, CTC/L, CTA/L, CTG/L, CCT/P, CCC/P, CCA/P, CCG/P, CAT/H, CAC/H, CAA/Q, CAG/Q, CGT/R, CGC/R, CGA/R, CGG/R, ATT/I, ATC/I, ATA/I, ATG/M+, ACT/T, ACC/T, ACA/T, ACG/T, AAT/N, AAC/N, AAA/K, AAG/K, AGT/S, AGC/S, AGA/R, AGG/R, GTT/V, GTC/V, GTA/V, GTG/V, GCT/A, GCC/A, GCA/A, GCG/A, GAT/D, GAC/D, GAA/E, GAG/E, GGT/G, GGC/G, GGA/G, GGG/G +codon.Bacterial_and_Plant_Plastid : TTT/F, TTC/F, TTA/L, TTG/L+, TCT/S, TCC/S, TCA/S, TCG/S, TAT/Y, TAC/Y, TAA/*, TAG/*, TGT/C, TGC/C, TGA/*, TGG/W, CTT/L, CTC/L, CTA/L, CTG/L+, CCT/P, CCC/P, CCA/P, CCG/P, CAT/H, CAC/H, CAA/Q, CAG/Q, CGT/R, CGC/R, CGA/R, CGG/R, ATT/I+, ATC/I+, ATA/I+, ATG/M+, ACT/T, ACC/T, ACA/T, ACG/T, AAT/N, AAC/N, AAA/K, AAG/K, AGT/S, AGC/S, AGA/R, AGG/R, GTT/V, GTC/V, GTA/V, GTG/V+, GCT/A, GCC/A, GCA/A, GCG/A, GAT/D, GAC/D, GAA/E, GAG/E, GGT/G, GGC/G, GGA/G, GGG/G +codon.Alternative_Yeast_Nuclear : TTT/F, TTC/F, TTA/L, TTG/L, TCT/S, TCC/S, TCA/S, TCG/S, TAT/Y, TAC/Y, TAA/*, TAG/*, TGT/C, TGC/C, TGA/*, TGG/W, CTT/L, CTC/L, CTA/L, CTG/S+, CCT/P, CCC/P, CCA/P, CCG/P, CAT/H, CAC/H, CAA/Q, CAG/Q, CGT/R, CGC/R, CGA/R, CGG/R, ATT/I, ATC/I, ATA/I, ATG/M+, ACT/T, ACC/T, ACA/T, ACG/T, AAT/N, AAC/N, AAA/K, AAG/K, AGT/S, AGC/S, AGA/R, AGG/R, GTT/V, GTC/V, GTA/V, GTG/V, GCT/A, GCC/A, GCA/A, GCG/A, GAT/D, GAC/D, GAA/E, GAG/E, GGT/G, GGC/G, GGA/G, GGG/G +codon.Ascidian_Mitochondrial : TTT/F, TTC/F, TTA/L, TTG/L+, TCT/S, TCC/S, TCA/S, TCG/S, TAT/Y, TAC/Y, TAA/*, TAG/*, TGT/C, TGC/C, TGA/W, TGG/W, CTT/L, CTC/L, CTA/L, CTG/L, CCT/P, CCC/P, CCA/P, CCG/P, CAT/H, CAC/H, CAA/Q, CAG/Q, CGT/R, CGC/R, CGA/R, CGG/R, ATT/I, ATC/I, ATA/M+, ATG/M+, ACT/T, ACC/T, ACA/T, ACG/T, AAT/N, AAC/N, AAA/K, AAG/K, AGT/S, AGC/S, AGA/G, AGG/G, GTT/V, GTC/V, GTA/V, GTG/V+, GCT/A, GCC/A, GCA/A, GCG/A, GAT/D, GAC/D, GAA/E, GAG/E, GGT/G, GGC/G, GGA/G, GGG/G +codon.Alternative_Flatworm_Mitochondrial : TTT/F, TTC/F, TTA/L, TTG/L, TCT/S, TCC/S, TCA/S, TCG/S, TAT/Y, TAC/Y, TAA/Y, TAG/*, TGT/C, TGC/C, TGA/W, TGG/W, CTT/L, CTC/L, CTA/L, CTG/L, CCT/P, CCC/P, CCA/P, CCG/P, CAT/H, CAC/H, CAA/Q, CAG/Q, CGT/R, CGC/R, CGA/R, CGG/R, ATT/I, ATC/I, ATA/I, ATG/M+, ACT/T, ACC/T, ACA/T, ACG/T, AAT/N, AAC/N, AAA/N, AAG/K, AGT/S, AGC/S, AGA/S, AGG/S, GTT/V, GTC/V, GTA/V, GTG/V, GCT/A, GCC/A, GCA/A, GCG/A, GAT/D, GAC/D, GAA/E, GAG/E, GGT/G, GGC/G, GGA/G, GGG/G +codon.Blepharisma_Macronuclear : TTT/F, TTC/F, TTA/L, TTG/L, TCT/S, TCC/S, TCA/S, TCG/S, TAT/Y, TAC/Y, TAA/*, TAG/Q, TGT/C, TGC/C, TGA/*, TGG/W, CTT/L, CTC/L, CTA/L, CTG/L, CCT/P, CCC/P, CCA/P, CCG/P, CAT/H, CAC/H, CAA/Q, CAG/Q, CGT/R, CGC/R, CGA/R, CGG/R, ATT/I, ATC/I, ATA/I, ATG/M+, ACT/T, ACC/T, ACA/T, ACG/T, AAT/N, AAC/N, AAA/K, AAG/K, AGT/S, AGC/S, AGA/R, AGG/R, GTT/V, GTC/V, GTA/V, GTG/V, GCT/A, GCC/A, GCA/A, GCG/A, GAT/D, GAC/D, GAA/E, GAG/E, GGT/G, GGC/G, GGA/G, GGG/G +codon.Chlorophycean_Mitochondrial : TTT/F, TTC/F, TTA/L, TTG/L, TCT/S, TCC/S, TCA/S, TCG/S, TAT/Y, TAC/Y, TAA/*, TAG/L, TGT/C, TGC/C, TGA/*, TGG/W, CTT/L, CTC/L, CTA/L, CTG/L, CCT/P, CCC/P, CCA/P, CCG/P, CAT/H, CAC/H, CAA/Q, CAG/Q, CGT/R, CGC/R, CGA/R, CGG/R, ATT/I, ATC/I, ATA/I, ATG/M+, ACT/T, ACC/T, ACA/T, ACG/T, AAT/N, AAC/N, AAA/K, AAG/K, AGT/S, AGC/S, AGA/R, AGG/R, GTT/V, GTC/V, GTA/V, GTG/V, GCT/A, GCC/A, GCA/A, GCG/A, GAT/D, GAC/D, GAA/E, GAG/E, GGT/G, GGC/G, GGA/G, GGG/G +codon.Trematode_Mitochondrial : TTT/F, TTC/F, TTA/L, TTG/L, TCT/S, TCC/S, TCA/S, TCG/S, TAT/Y, TAC/Y, TAA/*, TAG/*, TGT/C, TGC/C, TGA/W, TGG/W, CTT/L, CTC/L, CTA/L, CTG/L, CCT/P, CCC/P, CCA/P, CCG/P, CAT/H, CAC/H, CAA/Q, CAG/Q, CGT/R, CGC/R, CGA/R, CGG/R, ATT/I, ATC/I, ATA/M, ATG/M+, ACT/T, ACC/T, ACA/T, ACG/T, AAT/N, AAC/N, AAA/N, AAG/K, AGT/S, AGC/S, AGA/S, AGG/S, GTT/V, GTC/V, GTA/V, GTG/V+, GCT/A, GCC/A, GCA/A, GCG/A, GAT/D, GAC/D, GAA/E, GAG/E, GGT/G, GGC/G, GGA/G, GGG/G +codon.Scenedesmus_obliquus_Mitochondrial : TTT/F, TTC/F, TTA/L, TTG/L, TCT/S, TCC/S, TCA/*, TCG/S, TAT/Y, TAC/Y, TAA/*, TAG/L, TGT/C, TGC/C, TGA/*, TGG/W, CTT/L, CTC/L, CTA/L, CTG/L, CCT/P, CCC/P, CCA/P, CCG/P, CAT/H, CAC/H, CAA/Q, CAG/Q, CGT/R, CGC/R, CGA/R, CGG/R, ATT/I, ATC/I, ATA/I, ATG/M+, ACT/T, ACC/T, ACA/T, ACG/T, AAT/N, AAC/N, AAA/K, AAG/K, AGT/S, AGC/S, AGA/R, AGG/R, GTT/V, GTC/V, GTA/V, GTG/V, GCT/A, GCC/A, GCA/A, GCG/A, GAT/D, GAC/D, GAA/E, GAG/E, GGT/G, GGC/G, GGA/G, GGG/G +codon.Thraustochytrium_Mitochondrial : TTT/F, TTC/F, TTA/*, TTG/L, TCT/S, TCC/S, TCA/S, TCG/S, TAT/Y, TAC/Y, TAA/*, TAG/*, TGT/C, TGC/C, TGA/*, TGG/W, CTT/L, CTC/L, CTA/L, CTG/L, CCT/P, CCC/P, CCA/P, CCG/P, CAT/H, CAC/H, CAA/Q, CAG/Q, CGT/R, CGC/R, CGA/R, CGG/R, ATT/I+, ATC/I, ATA/I, ATG/M+, ACT/T, ACC/T, ACA/T, ACG/T, AAT/N, AAC/N, AAA/K, AAG/K, AGT/S, AGC/S, AGA/R, AGG/R, GTT/V, GTC/V, GTA/V, GTG/V+, GCT/A, GCC/A, GCA/A, GCG/A, GAT/D, GAC/D, GAA/E, GAG/E, GGT/G, GGC/G, GGA/G, GGG/G + +#------------------------------------------------------------------------------- +# Databases & Genomes +# +# One entry per genome version. +# +# For genome version 'ZZZ' the entries look like +# ZZZ.genome : Real name for ZZZ (e.g. 'Human') +# ZZZ.reference : [Optional] Comma separated list of URL to site/s where information for building ZZZ database was extracted. +# ZZZ.chrName.codonTable : [Optional] Define codon table used for chromosome 'chrName' (Default: 'codon.Standard') +# +#------------------------------------------------------------------------------- + +#--- +# Databases: Not from ENSEMBL +#--- + +# Prevotella bryantii B14 +ADWO01.genome : Prevotella bryantii B14 + +# Ailuropoda_melanoleuca +ailmel1.61.genome : Ailuropoda_melanoleuca + +# Anopheles_gambiae +agam.genome : Anopheles_gambiae +agam.reference : http://agambiae.vectorbase.org/GetData/ + +agam2.6.genome : Anopheles_gambiae +agam2.6.reference : http://agambiae.vectorbase.org/GetData/ + +agam3.7.genome : Anopheles_gambiae +agam3.7.reference : http://agambiae.vectorbase.org/GetData/ + +agam4.2.genome : Anopheles_gambiae +agam4.2.reference : https://www.vectorbase.org/downloads?field_organism_taxonomy_tid=367&field_download_file_type_tid=All&field_download_file_format_tid=473&field_status_value=Current + +# Arabidopsis lyrata +alyrata107.genome : Arabidopsis_lyrata +alyrata107.reference : http://www.phytozome.net/search.php?method=Org_Alyrata + +alyrata1.genome : Arabidopsis_lyrata +alyrata1.reference : http://genome.jgi-psf.org/Araly1/Araly1.download.ftp.html + +# Apis mellifera +amel2.genome : Bee +amel2.reference : http://beebase.org +amel2.MT.codonTable : Invertebrate_Mitochondrial + +# Apis mellifera. Transcripts inferred by Cufflinks. +amel2_cuff.genome : Bee +amel2_cuff.reference : http://beebase.org +amel2_cuff.MT.codonTable : Invertebrate_Mitochondrial + +# Apis mellifera 4.5 +amel4.5.genome : Bee +amel4.5.reference : http://biomirror.aarnet.edu.au/biomirror/ncbigenomes/Apis_mellifera/special_requests/gff/ + +# Aphid +aphid_v2.1.genome : Aphid +aphid_v2.1.reference : http://www.aphidbase.com/aphidbase + +# Aquilegia coerulea +aquiCoer.genome : Aquilegia_coerulea + +# Arabidopsis Thaliana +athaliana130.genome : Arabidopsis_Thaliana + athaliana130.reference : http://www.phytozome.net/dataUsagePolicy.php?org=Org_Athaliana + athaliana130.M.codonTable : Standard + +athalianaTair9.genome : Arabidopsis_Thaliana + athalianaTair9.reference : ftp://ftp.arabidopsis.org/home/tair/Genes/TAIR9_genome_release + athalianaTair9.M.codonTable : Standard + +athalianaTair10.genome : Arabidopsis_Thaliana + athalianaTair10.reference : ftp://ftp.arabidopsis.org/home/tair/Genes/TAIR10_genome_release + athalianaTair10.M.codonTable : Standard + +# Brassica Napus +brassica.napus.genome : Brassica Napus +brassica.napus.reference : http://www.ncbi.nlm.nih.gov/nuccore/GQ861354 + +# Candida_albicans_SC5314 +cAlbicansv21.genome: Candida_albicans_SC5314 + cAlbicansv21.reference: http://www.candidagenome.org/download/gff/C_albicans_SC5314/ + cAlbicansv21.Mt.codonTable : Yeast_Mitochondrial + +# C. Briggsae +c_briggsae_WS230.genome : Caenorhabditis_briggsae +c_briggsae_WS230.reference : ftp://ftp.wormbase.org/pub/wormbase/releases/WS230/species/c_briggsae/ + +# C. Remanei +c_remanei_WS234.genome : Caenorhabditis_briggsae +c_remanei_WS234.reference : ftp://ftp.wormbase.org/pub/wormbase/releases/WS234/species/c_remanei/ + +# Cryptococcus neoformans +c_neoformans.genome: Cryptococcus_neoformans +c_neoformans.reference: http://www.broadinstitute.org/annotation/genome/cryptococcus_neoformans/MultiDownloads.html + +# Camelus ferus +camelus_ferus.genome : Camelus ferus +camelus_ferus.reference : ftp://ftp.ncbi.nlm.nih.gov/genomes/Camelus_ferus/ + +# Candida glabrata CBS 138 +candida_glabrata_CBS_138.genome: Candida Glabrata +candida_glabrata_CBS_138.reference : http://www.ncbi.nlm.nih.gov/assembly/GCF_000002545.3 + +# Candida parapsilosis +c_parapsilosis_CDC317.genome : Candida parapsilosis +c_parapsilosis_CDC317.reference : http://www.candidagenome.org/download/sequence/C_parapsilosis_CDC317/current/ + +# Dog +canFam3.1.genome : Canis_familiaris +canFam3.1.reference : ftp://ftp.ncbi.nlm.nih.gov/genomes/Canis_lupus_familiaris/ + +canFam3.103.genome : Canis_familiaris +canFam3.103.reference : ftp://ftp.ncbi.nlm.nih.gov/genomes/Canis_lupus_familiaris/ + +# ChickPea +Cicer_arietinum_v1.genome : Chickpea +Cicer_arietinum_v1.reference : http://www.icrisat.org/gt-bt/ICGGC/GenomeManuscript.htm + +# CP000730 +CP000730.genome : Staphylococcus_aureus +CP000730.reference : http://www.ncbi.nlm.nih.gov/nuccore/CP000730.1 + +# Capsella_rubella_v1.0 (Toronto University, Grandiflora) +crubella_183.genome : Capsella_rubella_v1.83 + crubella_183.reference : ftp://ftp.jgi-psf.org/pub/compgen/phytozome/v9.0/Crubella + +# Drosophila melanogaster (FlyBase) +dm5.42.genome : Drosophila_melanogaster + dm5.42.dmel_mitochondrion_genome.codonTable : Vertebrate_Mitochondrial + +dm5.48.genome : Drosophila_melanogaster + dm5.48.reference : ftp://ftp.flybase.net/releases/current/dmel_r5.48/ + dm5.48.dmel_mitochondrion_genome.codonTable : Vertebrate_Mitochondrial + +# Drosophila simulans +dsim_fb201206.genome : Drosophila_simulans +dsim_fb201206.reference : ftp://ftp.flybase.net/releases/FB2012_06/dsim_r1.4 + +# Eucalyptus grandis +egrandis201.genome : Eucalyptus_grandis +egrandis201.reference : ftp://ftp.jgi-psf.org/pub/JGI_data/phytozome/v8.0/Egrandis/ + +# Glycine max +gmax1.09.genome: Glycine_Max +gmax1.09.reference: ftp://ftp.jgi-psf.org/pub/JGI_data/phytozome/v7.0/Gmax/ + +gmax1.09v8.genome: Glycine_Max +gmax1.09v8.reference: ftp://ftp.jgi-psf.org/pub/JGI_data/phytozome/v8.0/Gmax/ + +# Grape +grape.genome : Grape +grape.reference : http://genomes.cribi.unipd.it/DATA/ + +# G.Raimondii : Cotton +graimondii_221.genome : Cotton +graimondii_221.reference : ftp://ftp.jgi-psf.org/pub/compgen/phytozome/v9.0/Graimondii/ + +# Human herpesvirus 1, complete genome. NCBI Reference Sequence: NC_001806.1 +herpesvirus1.genome: Herpesvirus + +# Homo sapiens (hg19) (UCSC) +hg19.genome : Homo_sapiens (USCS) + hg19.reference : http://hgdownload.cse.ucsc.edu \ # Gene information from 'table' download + , http://hgdownload.cse.ucsc.edu/goldenPath/hg19/bigZips/chromFa.tar.gz \ # Genome sequence + , ftp://ftp.ncbi.nlm.nih.gov/refseq/H_sapiens/mRNA_Prot/human.protein.faa.gz \ # Protein + , ftp://ftp.ncbi.nlm.nih.gov/refseq/H_sapiens/mRNA_Prot/human.rna.fna.gz \ # CDS + , http://hgdownload.cse.ucsc.edu/goldenPath/hg19/database/refLink.txt.gz # Reflink + , http://hgdownload.cse.ucsc.edu/goldenPath/hg19/bigZips/refMrna.fa.gz # mRna + hg19.M.codonTable : Vertebrate_Mitochondrial + +# Homo sapiens (hg19) (UCSC) using knownGenes instead of RefSeq +hg19kg.genome : Homo_sapiens (UCSC KnownGenes) +hg19kg.reference : http://hgdownload.cse.ucsc.edu \ # Gene information from 'table/GTF' download + , http://hgdownload.cse.ucsc.edu/goldenPath/hg19/bigZips/chromFa.tar.gz \ # Genome sequence + +# Homo sapiens (hg38) (UCSC) +hg38.genome : Homo_sapiens (USCS) + hg38.reference : http://hgdownload.cse.ucsc.edu \ # Gene information from 'table' download + , http://hgdownload.cse.ucsc.edu/goldenPath/hg38/bigZips/chromFa.tar.gz \ # Genome sequence + , http://hgdownload.cse.ucsc.edu/goldenPath/hg38/bigZips/refMrna.fa.gz # mRna + hg38.M.codonTable : Vertebrate_Mitochondrial + +# Homo sapiens (hg38) (UCSC) using knownGenes instead of RefSeq +hg38kg.genome : Homo_sapiens (UCSC KnownGenes) +hg38kg.reference : http://hgdownload.cse.ucsc.edu \ # Gene information from 'table/GTF' download + , http://hgdownload.cse.ucsc.edu/goldenPath/hg38/bigZips/chromFa.tar.gz \ # Genome sequence + , http://hgdownload.cse.ucsc.edu/goldenPath/hg38/bigZips/refMrna.fa.gz # mRna + +# Version of Gencode 12 adapted for GTEX project +# Provided by Manuel Rivas (Oxford & Broad) +GRCh37.GTEX.genome : Homo_sapiens, Gencode 12, GTEX project + +# HIV_nc_001802_1 +hiv.genome : HIV + +# Grosmannia clavigera +kw1407.2012.genome: Grosmannia_clavigera + +# Leishmania genome +lmjf4.genome : LmajorFriedlin + +# Lusitatissimum: Flax +lusitatissimum_90.genome : Flax +lusitatissimum_90.reference : ftp://ftp.jgi-psf.org/pub/compgen/phytozome/v9.0/Lusitatissimum/ + +# Macaca_fascicularis 5.0 +Macaca_fascicularis.genome : Macaca_fascicularis + Macaca_fascicularis.reference : ftp://ftp.ncbi.nlm.nih.gov/genomes/Macaca_fascicularis/ + +# Mycobacterium tuberculosis +m_tuberculosis.genome : Mycobacterium_tuberculosis +m_tuberculosis.reference : ftp://ftp.sanger.ac.uk/pub/pathogens/Mycobacterium/tuberculosis/ + +# Mycobacterium tuberculosis H37Rv +m_tuberculosis_H37Rv.genome : Mycobacterium_tuberculosis H37Rv +m_tuberculosis_H37Rv.reference : http://www.ncbi.nlm.nih.gov/nuccore/NC_000962.3 + +# Maize version 5B +maizeZmB73.genome : Maize_ZmB73_5b + maizeZmB73.reference : http://ftp.maizesequence.org/ + maizeZmB73.Mt.codonTable : Vertebrate_Mitochondrial + +# Mycobacterium marinum M strain genome, version 31012012 +mmm.2012.genome : Mycobacterium_marinum_M + +# Mycoplasma pneumoninae FH +myco_fh.genome : Mycoplasma_pneumoninae_FH + +# Mycoplasma pneumoninae M129 +myco_m129.genome : Mycoplasma_pneumoninae_M129 + +# Neurospora Crassa +ncrassa.genome : Neurospora_Crassa_v10 +ncrassa.reference : http://www.broadinstitute.org/annotation/genome/neurospora/MultiDownloads.html + +neurospora_crassa_or74a_12.genome : Neurospora_Crassa_v12 +neurospora_crassa_or74a_12.reference : http://www.broadinstitute.org/annotation/genome/neurospora/MultiDownloads.html + +# Ecoli K12 MG1655 +NC_000913.genome : Escherichia_coli + NC_000913.1.NC_000913.1.codonTable: Bacterial_and_Plant_Plastid + +# Clostridium difficile +NC_009089.1.genome : Clostridium_difficile + NC_009089.1.NC_009089.1.codonTable: Bacterial_and_Plant_Plastid + +# Staphylococcus aureus +NC_003923.1.genome : Staphylococcus aureus + NC_003923.1.NC_003923.1.codonTable: Bacterial_and_Plant_Plastid + +# Pseudomonas aeruginosa +NC_011770.1.genome : Pseudomonas aeruginosa + NC_011770.1.C_011770.1.codonTable: Bacterial_and_Plant_Plastid + +# Staphylococcus aureus +NC_007793.1.genome : Staphylococcus aureus + NC_007793.1.NC_007793.1.codonTable: Bacterial_and_Plant_Plastid + +# Clostridium tetani +NC_004557.1.genome : Clostridium tetani + NC_004557.1.NC_004557.1.codonTable: Bacterial_and_Plant_Plastid + +# Prevotella ruminicola 23 +NC_014033.1.genome: Prevotella ruminicola 23 + NC_014033.1.NC_014033.1.codonTable: Bacterial_and_Plant_Plastid + +# Neurospora discreta +neurospora_discreta_v2.1.genome : Neurospora discreta +neurospora_discreta_v2.1.reference : http://fungidb.org/common/downloads/release-2.1/Neurospora_discreta_FGSC_8579 + +# Sheep +Oar_v3.1.genome : Sheep +Oar_v3.1.reference : ftp://ftp.ncbi.nlm.nih.gov/genomes/Ovis_aries/GFF/, ftp://ftp.ncbi.nlm.nih.gov/genomes/Ovis_aries/Assembled_chromosomes/seq/ + +# Pseudomonas aeruginosa, N_008463 +paeru.PA01.genome : Pseudomonas_aeruginosa + paeru.PA01.chromosomes : NC_002516.2 + paeru.PA01.NC_002516.2.codonTable: Bacterial_and_Plant_Plastid + +# Pseudomonas aeruginosa, N_008463 +paeru.PA14.genome : Pseudomonas_aeruginosa + paeru.PA14.chromosomes : NC_008463.1 + paeru.PA14.NC_008463.1.codonTable: Bacterial_and_Plant_Plastid + +# Peromyscus leucopus (white footed deer mice) +peromyscus.genome : Peromyscus leucopus + +# Phaseolus_vulgaris_218 +Phaseolus_vulgaris_218.genome : Phaseolus_vulgaris_218 +Phaseolus_vulgaris_218.reference : ftp://ftp.jgi-psf.org/pub/compgen/phytozome/v9.0/Pvulgaris + +# Plasmodium falciparum +plasmo72.genome: Plasmodium_falciparum + plasmo72.reference: http://plasmodb.org/common/downloads/release-7.2/Pfalciparum/ + plasmo72.apidb|cds_mal_mito_1-1.codonTable : Vertebrate_Mitochondrial + plasmo72.apidb|cds_mal_mito_2-1.codonTable : Vertebrate_Mitochondrial + plasmo72.apidb|cds_mal_mito_3-1.codonTable : Vertebrate_Mitochondrial + plasmo72.apidb|mal_mito_1.codonTable : Vertebrate_Mitochondrial + plasmo72.apidb|mal_mito_2.codonTable : Vertebrate_Mitochondrial + plasmo72.apidb|mal_mito_3.codonTable : Vertebrate_Mitochondrial + plasmo72.apidb|malmito_rna_10:rRNA.codonTable : Vertebrate_Mitochondrial + plasmo72.apidb|malmito_rna_15:rRNA.codonTable : Vertebrate_Mitochondrial + plasmo72.apidb|malmito_rna_16:rRNA.codonTable : Vertebrate_Mitochondrial + plasmo72.apidb|malmito_rna_17:rRNA.codonTable : Vertebrate_Mitochondrial + plasmo72.apidb|mal_mito_RNA19:rRNA.codonTable : Vertebrate_Mitochondrial + plasmo72.apidb|malmito_rna_1:rRNA.codonTable : Vertebrate_Mitochondrial + plasmo72.apidb|malmito_rna_20:rRNA.codonTable : Vertebrate_Mitochondrial + plasmo72.apidb|malmito_rna_21:rRNA.codonTable : Vertebrate_Mitochondrial + plasmo72.apidb|malmito_rna_9:rRNA.codonTable : Vertebrate_Mitochondrial + plasmo72.apidb|malmito_rna_LSUC:rRNA.codonTable : Vertebrate_Mitochondrial + plasmo72.apidb|malmito_rna_LSUF:rRNA.codonTable : Vertebrate_Mitochondrial + plasmo72.apidb|malmito_rna_LSUG:rRNA.codonTable : Vertebrate_Mitochondrial + plasmo72.apidb|malmito_rna_RNA11:rRNA.codonTable : Vertebrate_Mitochondrial + plasmo72.apidb|malmito_rna_RNA12:rRNA.codonTable : Vertebrate_Mitochondrial + plasmo72.apidb|malmito_rna_RNA14:rRNA.codonTable : Vertebrate_Mitochondrial + plasmo72.apidb|malmito_rna_RNA18:rRNA.codonTable : Vertebrate_Mitochondrial + plasmo72.apidb|malmito_rna_RNA22:rRNA.codonTable : Vertebrate_Mitochondrial + plasmo72.apidb|malmito_rna_RNA4:rRNA.codonTable : Vertebrate_Mitochondrial + plasmo72.apidb|malmito_rna_RNA5:rRNA.codonTable : Vertebrate_Mitochondrial + plasmo72.apidb|malmito_rna_RNA6:rRNA.codonTable : Vertebrate_Mitochondrial + plasmo72.apidb|malmito_rna_RNA7:rRNA.codonTable : Vertebrate_Mitochondrial + plasmo72.apidb|malmito_rna_SSUF:rRNA.codonTable : Vertebrate_Mitochondrial + plasmo72.apidb|malmito_SSUB:rRNA.codonTable : Vertebrate_Mitochondrial + +# Plasmodium falciparum +# By Daniel Park +Pf3D7v72.genome: Plasmodium_falciparum + Pf3D7v72.M76611.codonTable: Protozoan_Mitochondrial + Pf3D7v72.PFC10_API_IRAB.codonTable: Bacterial_and_Plant_Plastid + +Pf3D7v90.genome: Plasmodium_falciparum + Pf3D7v90.M76611.codonTable: Protozoan_Mitochondrial + Pf3D7v90.PFC10_API_IRAB.codonTable: Bacterial_and_Plant_Plastid + +# Requested by Martine Zilversmit +Pf3D7v91.genome: Plasmodium_falciparum + Pf3D7v91.reference: http://plasmodb.org/common/downloads/release-9.1/Pfalciparum3D7 + Pf3D7v91.cds_mal_mito_1-1.codonTable : Vertebrate_Mitochondrial + Pf3D7v91.cds_mal_mito_2-1.codonTable : Vertebrate_Mitochondrial + Pf3D7v91.cds_mal_mito_3-1.codonTable : Vertebrate_Mitochondrial + Pf3D7v91.mal_mito_1.codonTable : Vertebrate_Mitochondrial + Pf3D7v91.mal_mito_2.codonTable : Vertebrate_Mitochondrial + Pf3D7v91.mal_mito_3.codonTable : Vertebrate_Mitochondrial + Pf3D7v91.malmito_rna_10:rRNA.codonTable : Vertebrate_Mitochondrial + Pf3D7v91.malmito_rna_15:rRNA.codonTable : Vertebrate_Mitochondrial + Pf3D7v91.malmito_rna_16:rRNA.codonTable : Vertebrate_Mitochondrial + Pf3D7v91.malmito_rna_17:rRNA.codonTable : Vertebrate_Mitochondrial + Pf3D7v91.mal_mito_RNA19:rRNA.codonTable : Vertebrate_Mitochondrial + Pf3D7v91.malmito_rna_1:rRNA.codonTable : Vertebrate_Mitochondrial + Pf3D7v91.malmito_rna_20:rRNA.codonTable : Vertebrate_Mitochondrial + Pf3D7v91.malmito_rna_21:rRNA.codonTable : Vertebrate_Mitochondrial + Pf3D7v91.malmito_rna_9:rRNA.codonTable : Vertebrate_Mitochondrial + Pf3D7v91.malmito_rna_LSUC:rRNA.codonTable : Vertebrate_Mitochondrial + Pf3D7v91.malmito_rna_LSUF:rRNA.codonTable : Vertebrate_Mitochondrial + Pf3D7v91.malmito_rna_LSUG:rRNA.codonTable : Vertebrate_Mitochondrial + Pf3D7v91.malmito_rna_RNA11:rRNA.codonTable : Vertebrate_Mitochondrial + Pf3D7v91.malmito_rna_RNA12:rRNA.codonTable : Vertebrate_Mitochondrial + Pf3D7v91.malmito_rna_RNA14:rRNA.codonTable : Vertebrate_Mitochondrial + Pf3D7v91.malmito_rna_RNA18:rRNA.codonTable : Vertebrate_Mitochondrial + Pf3D7v91.malmito_rna_RNA22:rRNA.codonTable : Vertebrate_Mitochondrial + Pf3D7v91.malmito_rna_RNA4:rRNA.codonTable : Vertebrate_Mitochondrial + Pf3D7v91.malmito_rna_RNA5:rRNA.codonTable : Vertebrate_Mitochondrial + Pf3D7v91.malmito_rna_RNA6:rRNA.codonTable : Vertebrate_Mitochondrial + Pf3D7v91.malmito_rna_RNA7:rRNA.codonTable : Vertebrate_Mitochondrial + Pf3D7v91.malmito_rna_SSUF:rRNA.codonTable : Vertebrate_Mitochondrial + Pf3D7v91.malmito_SSUB:rRNA.codonTable : Vertebrate_Mitochondrial + +# Potato +potato_3.4.genome : Potato +potato_3.4.reference : http://potatogenomics.plantbiology.msu.edu/ + +# Peach (Prunus persica). +ppersica139.genome : Peach +ppersica139.reference : ftp://ftp.plantgdb.org/download/Genomes/PeGDB/ + +# Populus trichocarpa +ptrichocarpa210.genome : Populus_trichocarpa + +# Pseudomonas fluorescens +pfluo.SBW25.NC_009444.genome : Pseudomonas_fluorescens + pfluo.SBW25.NC_009444.chromosomes : NC_009444.1 + pfluo.SBW25.NC_009444.NC_009444.1.codonTable: Bacterial_and_Plant_Plastid + +# Pseudomonas fluorescens +pfluo.SBW25.NC_012660.genome : Pseudomonas_fluorescens + pfluo.SBW25.NC_012660.chromosomes : NC_012660.1 + pfluo.SBW25.NC_012660.NC_012660.1.codonTable: Bacterial_and_Plant_Plastid + +# Rice: http://rapdb.dna.affrc.go.jp/download/index.html +rice5.genome: Rice +rice5.reference: http://rapdb.dna.affrc.go.jp/download/index.html + +rice6.1.genome: Rice +rice6.1.reference: ftp://ftp.plantbiology.msu.edu,ftp://ftp.plantbiology.msu.edu/pub/data/Eukaryotic_Projects/o_sativa/annotation_dbs/ + +rice7.genome: Rice +rice7.reference: ftp://ftp.plantbiology.msu.edu/pub/data/Eukaryotic_Projects/o_sativa/annotation_dbs/pseudomolecules/version_7.0/ + +rice_rap201304.genome: Rice RAPDB + rice_rap201304.reference: http://rapdb.dna.affrc.go.jp/download + +# Staphylococcus aureus SA957 +SA957.genome: Staphylococcus aureus subsp. aureus SA957 +SA957.reference: http://www.ncbi.nlm.nih.gov/nuccore/NC_022442.1?report=genbank&from=2109945&to=2110238&strand=true + +# SCU49845 +SCU49845.genome : SCU49845 + +# HIV virus +SIVmac239.genome : HIV +SIVmac239.reference : http://www.ncbi.nlm.nih.gov/nuccore/334647 + +# Tomato +SL2.40.genome : Tomato +SL2.40.reference : ftp://ftp.solgenomics.net/,ftp://ftp.solgenomics.net/genomes/Solanum_lycopersicum/wgs/assembly/build_2.40/S_lycopersicum_chromosomes.2.40.fa.gz,http://solgenomics.net/itag/release/2.3/list_files(ITAG2.3_gene_models.gff3) + +# Tomato +SL2.50.genome : Tomato +SL2.50.reference : ftp://ftp.solgenomics.net/tomato_genome/annotation/ITAG2.4_release/ + +# Schizosaccharomyces pombe (fission yeast). +spombe.genome : Schizosaccharomyces_pombe +spombe.reference : ftp://ftp.sanger.ac.uk/pub/yeast/pombe/GFF + +# Tribolium +Tcas_3.0.genome : Tribolium +Tcas_3.0.reference : Files_from_Sarah_Behrens_Unpublished@uni-muenster.de + +Triticum_aestivum.IWGSP1.21.genome : Triticum_aestivum.IWGSP1.21 + +# Meleagris_gallopavo (Turkey) +turkey.UMD2.61.genome : Meleagris_gallopavo + +# Bos taurus : University of Maryland version 3.1 +UMD3_1.genome : Bos_taurus + +# Vaccinia WR (NCBIM37) (ENSEMBL) gi|29692106|gb|AY243312.1| +vacwr.genome : Vaccinia_Western_Reserve + +# Vibrio Cholerae +vibrio.genome : Vibrio Cholerae + vibrio.chromosomes : NC_002505.1, NC_002506.1 + vibrio.NC_002505.1.codonTable : Bacterial_and_Plant_Plastid + vibrio.NC_002506.1.codonTable : Bacterial_and_Plant_Plastid + +# C. elegans (WormBase) +WS241.genome : C. elegans + +# Vitis vinifera +vvinifera.genome : Vitis vinifera +vvinifera.reference : http://www.genoscope.cns.fr/externe/GenomeBrowser/Vitis/ + +# Xiphophorus maculatus (Southern platyfish) +xmac.69.genome : Xiphophorus_maculatus + xmac.69.reference : ftp://ftp.ensembl.org/pub/release-69/fasta/xiphophorus_maculatus/dna/Xiphophorus_maculatus.Xipmac4.4.2.69.dna.toplevel.fa.gz \ + , ftp://ftp.ensembl.org/pub/release-69/fasta/xiphophorus_maculatus/pep/Xiphophorus_maculatus.Xipmac4.4.2.69.pep.all.fa.gz \ + , ftp://ftp.ensembl.org/pub/release-69/fasta/xiphophorus_maculatus/cdna/Xiphophorus_maculatus.Xipmac4.4.2.69.cdna.all.fa.gz + +# Xenopus tropicalis +xtrop7.1.genome : Xenopus_tropicalis +xtrop7.1.reference : ftp://ftp.xenbase.org/pub/Genomics/JGI/Xentr7.1/ + +# Zonotrichia_albicollis : White throated sparrow +Zonotrichia_albicollis_1.0.genome : Zonotrichia_albicollis_1.0 + Zonotrichia_albicollis_1.0.reference : ftp://ftp.ncbi.nlm.nih.gov/genomes/Zonotrichia_albicollis/ + +# Ebola virus +ebola_zaire.genome: Ebola Zaire Virus KJ660346.1 + + +#--- +# Test cases: Generic +#--- +test.genome : TestCase +testCase.genome : TestCase + +#--- +# Test cases: Human GRCh37 / hg19 +#--- + +# Hg19 +testHg19Chr1.genome : TestCase +testHg19Hgvs.genome : Tesg HGVS hg19 + +# GRCh37.61 +testHg37.61.genome : TestCase +testHg3761Chr15.genome : TestCase +testHg3761Chr16.genome : TestCase + +# GRCh37.63 +testHg3763Chr1.genome : TestCase +testHg3763Chr20.genome : TestCase +testHg3763ChrY.genome : TestCase + +# GRCh37.65 +testHg3765Chr22.genome : TestCase + +# GRCh37.66 +testHg3766Chr1.genome : TestCase + +# GRCh37.67 +testHg3767Chr21Mt.genome : TestCase +testHg3767Chr21Mt.MT.codonTable : Vertebrate_Mitochondrial + +# GRCh37.69 +testHg3769Chr12.genome : TestCase + +# GRCh37.70 +testHg3770Chr22.genome : TestCase + +# GRCh37.71 +testHg3771Chr1.genome : TestCase + +# GRCh37.73 +testHg3773Chr3.genome : TestCase + +# GRCh37.75 +testHg3775Chr1.genome : TestCase +testHg3775Chr2.genome : TestCase +testHg3775Chr6.genome : TestCase +testHg3775Chr7.genome : TestCase +testHg3775Chr11.genome : TestCase +testHg3775Chr12.genome : TestCase +testHg3775Chr14.genome : TestCase +testHg3775Chr22.genome : TestCase + +# Human genes and transcripts +testENST00000268124.genome : Test testENST00000268124 +testENST00000398332.genome : Test testENST00000398332 +test_ENSG00000158062.genome : TestCase +testENST00000529892.genome : Test ENST00000529892 + +#--- +# Test cases: Non-human +#--- + +testMm37.61.genome : Mus_musculus +testEgrandis.genome : Test egrandis201 scaffold_5 +testRice5.genome : Rice +testLukas.genome : Lukas_Schrader +testEmblPberghei.genome : Test_Embl_Pberghei +testAP.genome : Test test_Adrian_Platts_vegi_genome +testMaizeZmB73.genome : Test MaizeZmB73 +testMacuminata.genome : Test macuminata_v2.180614 + +#--- +# Test cases: Quick tests and debugging +#--- + +zzz.genome : Zzz test + +#--- +# Ensembl 70 versions +#--- + +ailMel1.70.genome : Ailuropoda_melanoleuca +ailMel1.70.reference : ftp://ftp.ensembl.org/pub/release-70/gtf/ + +AnoCar2.0.70.genome : Anolis_carolinensis +AnoCar2.0.70.reference : ftp://ftp.ensembl.org/pub/release-70/gtf/ + +UMD3.1.70.genome : Bos_taurus +UMD3.1.70.reference : ftp://ftp.ensembl.org/pub/release-70/gtf/ + +WBcel215.70.genome : Caenorhabditis_elegans +WBcel215.70.reference : ftp://ftp.ensembl.org/pub/release-70/gtf/ + +C_jacchus3.2.1.70.genome : Callithrix_jacchus +C_jacchus3.2.1.70.reference : ftp://ftp.ensembl.org/pub/release-70/gtf/ + +CanFam3.1.70.genome : Canis_familiaris +CanFam3.1.70.reference : ftp://ftp.ensembl.org/pub/release-70/gtf/ + +cavPor3.70.genome : Cavia_porcellus +cavPor3.70.reference : ftp://ftp.ensembl.org/pub/release-70/gtf/ + +choHof1.70.genome : Choloepus_hoffmanni +choHof1.70.reference : ftp://ftp.ensembl.org/pub/release-70/gtf/ + +KH.70.genome : Ciona_intestinalis +KH.70.reference : ftp://ftp.ensembl.org/pub/release-70/gtf/ + +CSAV2.0.70.genome : Ciona_savignyi +CSAV2.0.70.reference : ftp://ftp.ensembl.org/pub/release-70/gtf/ + +Zv9.70.genome : Danio_rerio +Zv9.70.reference : ftp://ftp.ensembl.org/pub/release-70/gtf/ + +dasNov2.70.genome : Dasypus_novemcinctus +dasNov2.70.reference : ftp://ftp.ensembl.org/pub/release-70/gtf/ + +dipOrd1.70.genome : Dipodomys_ordii +dipOrd1.70.reference : ftp://ftp.ensembl.org/pub/release-70/gtf/ + +BDGP5.70.genome : Drosophila_melanogaster +BDGP5.70.reference : ftp://ftp.ensembl.org/pub/release-70/gtf/ + +TENREC.70.genome : Echinops_telfairi +TENREC.70.reference : ftp://ftp.ensembl.org/pub/release-70/gtf/ + +EquCab2.70.genome : Equus_caballus +EquCab2.70.reference : ftp://ftp.ensembl.org/pub/release-70/gtf/ + +HEDGEHOG.70.genome : Erinaceus_europaeus +HEDGEHOG.70.reference : ftp://ftp.ensembl.org/pub/release-70/gtf/ + +Felis_catus_6.2.70.genome : Felis_catus +Felis_catus_6.2.70.reference : ftp://ftp.ensembl.org/pub/release-70/gtf/ + +gadMor1.70.genome : Gadus_morhua +gadMor1.70.reference : ftp://ftp.ensembl.org/pub/release-70/gtf/ + +WASHUC2.70.genome : Gallus_gallus +WASHUC2.70.reference : ftp://ftp.ensembl.org/pub/release-70/gtf/ + +BROADS1.70.genome : Gasterosteus_aculeatus +BROADS1.70.reference : ftp://ftp.ensembl.org/pub/release-70/gtf/ + +gorGor3.1.70.genome : Gorilla_gorilla +gorGor3.1.70.reference : ftp://ftp.ensembl.org/pub/release-70/gtf/ + +GRCh37.70.genome : Homo_sapiens +GRCh37.70.reference : ftp://ftp.ensembl.org/pub/release-70/gtf/ + +spetri2.70.genome : Ictidomys_tridecemlineatus +spetri2.70.reference : ftp://ftp.ensembl.org/pub/release-70/gtf/ + +LatCha1.70.genome : Latimeria_chalumnae +LatCha1.70.reference : ftp://ftp.ensembl.org/pub/release-70/gtf/ + +loxAfr3.70.genome : Loxodonta_africana +loxAfr3.70.reference : ftp://ftp.ensembl.org/pub/release-70/gtf/ + +MMUL_1.70.genome : Macaca_mulatta +MMUL_1.70.reference : ftp://ftp.ensembl.org/pub/release-70/gtf/ + +Meug_1.0.70.genome : Macropus_eugenii +Meug_1.0.70.reference : ftp://ftp.ensembl.org/pub/release-70/gtf/ + +UMD2.70.genome : Meleagris_gallopavo +UMD2.70.reference : ftp://ftp.ensembl.org/pub/release-70/gtf/ + +micMur1.70.genome : Microcebus_murinus +micMur1.70.reference : ftp://ftp.ensembl.org/pub/release-70/gtf/ + +BROADO5.70.genome : Monodelphis_domestica +BROADO5.70.reference : ftp://ftp.ensembl.org/pub/release-70/gtf/ + +GRCm38.70.genome : Mus_musculus +GRCm38.70.reference : ftp://ftp.ensembl.org/pub/release-70/gtf/ + +MusPutFur1.0.70.genome : Mustela_putorius_furo +MusPutFur1.0.70.reference : ftp://ftp.ensembl.org/pub/release-70/gtf/ + +Myoluc2.0.70.genome : Myotis_lucifugus +Myoluc2.0.70.reference : ftp://ftp.ensembl.org/pub/release-70/gtf/ + +Nleu1.0.70.genome : Nomascus_leucogenys +Nleu1.0.70.reference : ftp://ftp.ensembl.org/pub/release-70/gtf/ + +pika.70.genome : Ochotona_princeps +pika.70.reference : ftp://ftp.ensembl.org/pub/release-70/gtf/ + +Orenil1.0.70.genome : Oreochromis_niloticus +Orenil1.0.70.reference : ftp://ftp.ensembl.org/pub/release-70/gtf/ + +OANA5.70.genome : Ornithorhynchus_anatinus +OANA5.70.reference : ftp://ftp.ensembl.org/pub/release-70/gtf/ + +oryCun2.70.genome : Oryctolagus_cuniculus +oryCun2.70.reference : ftp://ftp.ensembl.org/pub/release-70/gtf/ + +MEDAKA1.70.genome : Oryzias_latipes +MEDAKA1.70.reference : ftp://ftp.ensembl.org/pub/release-70/gtf/ + +OtoGar3.70.genome : Otolemur_garnettii +OtoGar3.70.reference : ftp://ftp.ensembl.org/pub/release-70/gtf/ + +CHIMP2.1.4.70.genome : Pan_troglodytes +CHIMP2.1.4.70.reference : ftp://ftp.ensembl.org/pub/release-70/gtf/ + +PelSin_1.0.70.genome : Pelodiscus_sinensis +PelSin_1.0.70.reference : ftp://ftp.ensembl.org/pub/release-70/gtf/ + +Pmarinus_7.0.70.genome : Petromyzon_marinus +Pmarinus_7.0.70.reference : ftp://ftp.ensembl.org/pub/release-70/gtf/ + +PPYG2.70.genome : Pongo_abelii +PPYG2.70.reference : ftp://ftp.ensembl.org/pub/release-70/gtf/ + +proCap1.70.genome : Procavia_capensis +proCap1.70.reference : ftp://ftp.ensembl.org/pub/release-70/gtf/ + +pteVam1.70.genome : Pteropus_vampyrus +pteVam1.70.reference : ftp://ftp.ensembl.org/pub/release-70/gtf/ + +Rnor_5.0.70.genome : Rattus_norvegicus +Rnor_5.0.70.reference : ftp://ftp.ensembl.org/pub/release-70/gtf/ + +EF4.70.genome : Saccharomyces_cerevisiae +EF4.70.reference : ftp://ftp.ensembl.org/pub/release-70/gtf/ + +DEVIL7.0.70.genome : Sarcophilus_harrisii +DEVIL7.0.70.reference : ftp://ftp.ensembl.org/pub/release-70/gtf/ + +COMMON_SHREW1.70.genome : Sorex_araneus +COMMON_SHREW1.70.reference : ftp://ftp.ensembl.org/pub/release-70/gtf/ + +Sscrofa10.2.70.genome : Sus_scrofa +Sscrofa10.2.70.reference : ftp://ftp.ensembl.org/pub/release-70/gtf/ + +taeGut3.2.4.70.genome : Taeniopygia_guttata +taeGut3.2.4.70.reference : ftp://ftp.ensembl.org/pub/release-70/gtf/ + +FUGU4.70.genome : Takifugu_rubripes +FUGU4.70.reference : ftp://ftp.ensembl.org/pub/release-70/gtf/ + +tarSyr1.70.genome : Tarsius_syrichta +tarSyr1.70.reference : ftp://ftp.ensembl.org/pub/release-70/gtf/ + +TETRAODON8.70.genome : Tetraodon_nigroviridis +TETRAODON8.70.reference : ftp://ftp.ensembl.org/pub/release-70/gtf/ + +TREESHREW.70.genome : Tupaia_belangeri +TREESHREW.70.reference : ftp://ftp.ensembl.org/pub/release-70/gtf/ + +turTru1.70.genome : Tursiops_truncatus +turTru1.70.reference : ftp://ftp.ensembl.org/pub/release-70/gtf/ + +vicPac1.70.genome : Vicugna_pacos +vicPac1.70.reference : ftp://ftp.ensembl.org/pub/release-70/gtf/ + +JGI_4.2.70.genome : Xenopus_tropicalis +JGI_4.2.70.reference : ftp://ftp.ensembl.org/pub/release-70/gtf/ + +Xipmac4.4.2.70.genome : Xiphophorus_maculatus +Xipmac4.4.2.70.reference : ftp://ftp.ensembl.org/pub/release-70/gtf/ + +# Mitochondrial chromosomes + +ailMel1.70.MT.codonTable : Vertebrate_Mitochondrial +AnoCar2.0.70.MT.codonTable : Vertebrate_Mitochondrial +BROADO5.70.MT.codonTable : Vertebrate_Mitochondrial +BROADS1.70.MT.codonTable : Vertebrate_Mitochondrial +CanFam3.1.70.MT.codonTable : Vertebrate_Mitochondrial +cavPor3.70.MT.codonTable : Vertebrate_Mitochondrial +CHIMP2.1.4.70.MT.codonTable : Vertebrate_Mitochondrial +DEVIL7.0.70.MT.codonTable : Vertebrate_Mitochondrial +EquCab2.70.MT.codonTable : Vertebrate_Mitochondrial +Felis_catus_6.2.70.MT.codonTable : Vertebrate_Mitochondrial +FUGU4.70.MT.codonTable : Vertebrate_Mitochondrial +gorGor3.1.70.MT.codonTable : Vertebrate_Mitochondrial +GRCh37.70.MT.codonTable : Vertebrate_Mitochondrial +GRCm38.70.MT.codonTable : Vertebrate_Mitochondrial +KH.70.MT.codonTable : Vertebrate_Mitochondrial +LatCha1.70.MT.codonTable : Vertebrate_Mitochondrial +loxAfr3.70.MT.codonTable : Vertebrate_Mitochondrial +MMUL_1.70.MT.codonTable : Vertebrate_Mitochondrial +OANA5.70.MT.codonTable : Vertebrate_Mitochondrial +oryCun2.70.MT.codonTable : Vertebrate_Mitochondrial +PelSin_1.0.70.MT.codonTable : Vertebrate_Mitochondrial +PPYG2.70.MT.codonTable : Vertebrate_Mitochondrial +Rnor_5.0.70.MT.codonTable : Vertebrate_Mitochondrial +Sscrofa10.2.70.MT.codonTable : Vertebrate_Mitochondrial +taeGut3.2.4.70.MT.codonTable : Vertebrate_Mitochondrial +TETRAODON8.70.MT.codonTable : Vertebrate_Mitochondrial +UMD2.70.MT.codonTable : Vertebrate_Mitochondrial +UMD3.1.70.MT.codonTable : Vertebrate_Mitochondrial +WASHUC2.70.MT.codonTable : Vertebrate_Mitochondrial +Zv9.70.MT.codonTable : Vertebrate_Mitochondrial +BDGP5.70.dmel_mitochondrion_genome.codonTable : Invertebrate_Mitochondrial +EF4.70.Mito.codonTable : Vertebrate_Mitochondrial +WBcel215.70.MtDNA.codonTable : Invertebrate_Mitochondrial +#--- +# Ensembl 71 versions +#--- + +ailMel1.71.genome : Ailuropoda_melanoleuca +ailMel1.71.reference : ftp://ftp.ensembl.org/pub/release-71/gtf/ + +AnoCar2.0.71.genome : Anolis_carolinensis +AnoCar2.0.71.reference : ftp://ftp.ensembl.org/pub/release-71/gtf/ + +UMD3.1.71.genome : Bos_taurus +UMD3.1.71.reference : ftp://ftp.ensembl.org/pub/release-71/gtf/ + +WBcel235.71.genome : Caenorhabditis_elegans +WBcel235.71.reference : ftp://ftp.ensembl.org/pub/release-71/gtf/ + +C_jacchus3.2.1.71.genome : Callithrix_jacchus +C_jacchus3.2.1.71.reference : ftp://ftp.ensembl.org/pub/release-71/gtf/ + +CanFam3.1.71.genome : Canis_familiaris +CanFam3.1.71.reference : ftp://ftp.ensembl.org/pub/release-71/gtf/ + +cavPor3.71.genome : Cavia_porcellus +cavPor3.71.reference : ftp://ftp.ensembl.org/pub/release-71/gtf/ + +choHof1.71.genome : Choloepus_hoffmanni +choHof1.71.reference : ftp://ftp.ensembl.org/pub/release-71/gtf/ + +KH.71.genome : Ciona_intestinalis +KH.71.reference : ftp://ftp.ensembl.org/pub/release-71/gtf/ + +CSAV2.0.71.genome : Ciona_savignyi +CSAV2.0.71.reference : ftp://ftp.ensembl.org/pub/release-71/gtf/ + +Zv9.71.genome : Danio_rerio +Zv9.71.reference : ftp://ftp.ensembl.org/pub/release-71/gtf/ + +dasNov2.71.genome : Dasypus_novemcinctus +dasNov2.71.reference : ftp://ftp.ensembl.org/pub/release-71/gtf/ + +dipOrd1.71.genome : Dipodomys_ordii +dipOrd1.71.reference : ftp://ftp.ensembl.org/pub/release-71/gtf/ + +BDGP5.71.genome : Drosophila_melanogaster +BDGP5.71.reference : ftp://ftp.ensembl.org/pub/release-71/gtf/ + +TENREC.71.genome : Echinops_telfairi +TENREC.71.reference : ftp://ftp.ensembl.org/pub/release-71/gtf/ + +EquCab2.71.genome : Equus_caballus +EquCab2.71.reference : ftp://ftp.ensembl.org/pub/release-71/gtf/ + +HEDGEHOG.71.genome : Erinaceus_europaeus +HEDGEHOG.71.reference : ftp://ftp.ensembl.org/pub/release-71/gtf/ + +Felis_catus_6.2.71.genome : Felis_catus +Felis_catus_6.2.71.reference : ftp://ftp.ensembl.org/pub/release-71/gtf/ + +gadMor1.71.genome : Gadus_morhua +gadMor1.71.reference : ftp://ftp.ensembl.org/pub/release-71/gtf/ + +Galgal4.71.genome : Gallus_gallus +Galgal4.71.reference : ftp://ftp.ensembl.org/pub/release-71/gtf/ + +BROADS1.71.genome : Gasterosteus_aculeatus +BROADS1.71.reference : ftp://ftp.ensembl.org/pub/release-71/gtf/ + +gorGor3.1.71.genome : Gorilla_gorilla +gorGor3.1.71.reference : ftp://ftp.ensembl.org/pub/release-71/gtf/ + +GRCh37.71.genome : Homo_sapiens +GRCh37.71.reference : ftp://ftp.ensembl.org/pub/release-71/gtf/ + +spetri2.71.genome : Ictidomys_tridecemlineatus +spetri2.71.reference : ftp://ftp.ensembl.org/pub/release-71/gtf/ + +LatCha1.71.genome : Latimeria_chalumnae +LatCha1.71.reference : ftp://ftp.ensembl.org/pub/release-71/gtf/ + +loxAfr3.71.genome : Loxodonta_africana +loxAfr3.71.reference : ftp://ftp.ensembl.org/pub/release-71/gtf/ + +MMUL_1.71.genome : Macaca_mulatta +MMUL_1.71.reference : ftp://ftp.ensembl.org/pub/release-71/gtf/ + +Meug_1.0.71.genome : Macropus_eugenii +Meug_1.0.71.reference : ftp://ftp.ensembl.org/pub/release-71/gtf/ + +UMD2.71.genome : Meleagris_gallopavo +UMD2.71.reference : ftp://ftp.ensembl.org/pub/release-71/gtf/ + +micMur1.71.genome : Microcebus_murinus +micMur1.71.reference : ftp://ftp.ensembl.org/pub/release-71/gtf/ + +BROADO5.71.genome : Monodelphis_domestica +BROADO5.71.reference : ftp://ftp.ensembl.org/pub/release-71/gtf/ + +GRCm38.71.genome : Mus_musculus +GRCm38.71.reference : ftp://ftp.ensembl.org/pub/release-71/gtf/ + +MusPutFur1.0.71.genome : Mustela_putorius_furo +MusPutFur1.0.71.reference : ftp://ftp.ensembl.org/pub/release-71/gtf/ + +Myoluc2.0.71.genome : Myotis_lucifugus +Myoluc2.0.71.reference : ftp://ftp.ensembl.org/pub/release-71/gtf/ + +Nleu1.0.71.genome : Nomascus_leucogenys +Nleu1.0.71.reference : ftp://ftp.ensembl.org/pub/release-71/gtf/ + +pika.71.genome : Ochotona_princeps +pika.71.reference : ftp://ftp.ensembl.org/pub/release-71/gtf/ + +Orenil1.0.71.genome : Oreochromis_niloticus +Orenil1.0.71.reference : ftp://ftp.ensembl.org/pub/release-71/gtf/ + +OANA5.71.genome : Ornithorhynchus_anatinus +OANA5.71.reference : ftp://ftp.ensembl.org/pub/release-71/gtf/ + +oryCun2.71.genome : Oryctolagus_cuniculus +oryCun2.71.reference : ftp://ftp.ensembl.org/pub/release-71/gtf/ + +MEDAKA1.71.genome : Oryzias_latipes +MEDAKA1.71.reference : ftp://ftp.ensembl.org/pub/release-71/gtf/ + +OtoGar3.71.genome : Otolemur_garnettii +OtoGar3.71.reference : ftp://ftp.ensembl.org/pub/release-71/gtf/ + +CHIMP2.1.4.71.genome : Pan_troglodytes +CHIMP2.1.4.71.reference : ftp://ftp.ensembl.org/pub/release-71/gtf/ + +PelSin_1.0.71.genome : Pelodiscus_sinensis +PelSin_1.0.71.reference : ftp://ftp.ensembl.org/pub/release-71/gtf/ + +Pmarinus_7.0.71.genome : Petromyzon_marinus +Pmarinus_7.0.71.reference : ftp://ftp.ensembl.org/pub/release-71/gtf/ + +PPYG2.71.genome : Pongo_abelii +PPYG2.71.reference : ftp://ftp.ensembl.org/pub/release-71/gtf/ + +proCap1.71.genome : Procavia_capensis +proCap1.71.reference : ftp://ftp.ensembl.org/pub/release-71/gtf/ + +pteVam1.71.genome : Pteropus_vampyrus +pteVam1.71.reference : ftp://ftp.ensembl.org/pub/release-71/gtf/ + +Rnor_5.0.71.genome : Rattus_norvegicus +Rnor_5.0.71.reference : ftp://ftp.ensembl.org/pub/release-71/gtf/ + +EF4.71.genome : Saccharomyces_cerevisiae +EF4.71.reference : ftp://ftp.ensembl.org/pub/release-71/gtf/ + +DEVIL7.0.71.genome : Sarcophilus_harrisii +DEVIL7.0.71.reference : ftp://ftp.ensembl.org/pub/release-71/gtf/ + +COMMON_SHREW1.71.genome : Sorex_araneus +COMMON_SHREW1.71.reference : ftp://ftp.ensembl.org/pub/release-71/gtf/ + +Sscrofa10.2.71.genome : Sus_scrofa +Sscrofa10.2.71.reference : ftp://ftp.ensembl.org/pub/release-71/gtf/ + +taeGut3.2.4.71.genome : Taeniopygia_guttata +taeGut3.2.4.71.reference : ftp://ftp.ensembl.org/pub/release-71/gtf/ + +FUGU4.71.genome : Takifugu_rubripes +FUGU4.71.reference : ftp://ftp.ensembl.org/pub/release-71/gtf/ + +tarSyr1.71.genome : Tarsius_syrichta +tarSyr1.71.reference : ftp://ftp.ensembl.org/pub/release-71/gtf/ + +TETRAODON8.71.genome : Tetraodon_nigroviridis +TETRAODON8.71.reference : ftp://ftp.ensembl.org/pub/release-71/gtf/ + +TREESHREW.71.genome : Tupaia_belangeri +TREESHREW.71.reference : ftp://ftp.ensembl.org/pub/release-71/gtf/ + +turTru1.71.genome : Tursiops_truncatus +turTru1.71.reference : ftp://ftp.ensembl.org/pub/release-71/gtf/ + +vicPac1.71.genome : Vicugna_pacos +vicPac1.71.reference : ftp://ftp.ensembl.org/pub/release-71/gtf/ + +JGI_4.2.71.genome : Xenopus_tropicalis +JGI_4.2.71.reference : ftp://ftp.ensembl.org/pub/release-71/gtf/ + +Xipmac4.4.2.71.genome : Xiphophorus_maculatus +Xipmac4.4.2.71.reference : ftp://ftp.ensembl.org/pub/release-71/gtf/ + +# Mitochondrial chromosomes + +ailMel1.71.MT.codonTable : Vertebrate_Mitochondrial +AnoCar2.0.71.MT.codonTable : Vertebrate_Mitochondrial +BROADO5.71.MT.codonTable : Vertebrate_Mitochondrial +BROADS1.71.MT.codonTable : Vertebrate_Mitochondrial +CanFam3.1.71.MT.codonTable : Vertebrate_Mitochondrial +cavPor3.71.MT.codonTable : Vertebrate_Mitochondrial +CHIMP2.1.4.71.MT.codonTable : Vertebrate_Mitochondrial +DEVIL7.0.71.MT.codonTable : Vertebrate_Mitochondrial +EquCab2.71.MT.codonTable : Vertebrate_Mitochondrial +FUGU4.71.MT.codonTable : Vertebrate_Mitochondrial +Galgal4.71.MT.codonTable : Vertebrate_Mitochondrial +gorGor3.1.71.MT.codonTable : Vertebrate_Mitochondrial +GRCh37.71.MT.codonTable : Vertebrate_Mitochondrial +GRCm38.71.MT.codonTable : Vertebrate_Mitochondrial +KH.71.MT.codonTable : Vertebrate_Mitochondrial +LatCha1.71.MT.codonTable : Vertebrate_Mitochondrial +loxAfr3.71.MT.codonTable : Vertebrate_Mitochondrial +MMUL_1.71.MT.codonTable : Vertebrate_Mitochondrial +OANA5.71.MT.codonTable : Vertebrate_Mitochondrial +oryCun2.71.MT.codonTable : Vertebrate_Mitochondrial +PelSin_1.0.71.MT.codonTable : Vertebrate_Mitochondrial +PPYG2.71.MT.codonTable : Vertebrate_Mitochondrial +Rnor_5.0.71.MT.codonTable : Vertebrate_Mitochondrial +Sscrofa10.2.71.MT.codonTable : Vertebrate_Mitochondrial +taeGut3.2.4.71.MT.codonTable : Vertebrate_Mitochondrial +TETRAODON8.71.MT.codonTable : Vertebrate_Mitochondrial +UMD2.71.MT.codonTable : Vertebrate_Mitochondrial +UMD3.1.71.MT.codonTable : Vertebrate_Mitochondrial +Zv9.71.MT.codonTable : Vertebrate_Mitochondrial +BDGP5.71.dmel_mitochondrion_genome.codonTable : Invertebrate_Mitochondrial +EF4.71.Mito.codonTable : Vertebrate_Mitochondrial +WBcel235.71.MtDNA.codonTable : Invertebrate_Mitochondrial +#--- +# Ensembl 72 versions +#--- + +ailMel1.72.genome : Ailuropoda_melanoleuca +ailMel1.72.reference : ftp://ftp.ensembl.org/pub/release-72/gtf/ + +AnoCar2.0.72.genome : Anolis_carolinensis +AnoCar2.0.72.reference : ftp://ftp.ensembl.org/pub/release-72/gtf/ + +UMD3.1.72.genome : Bos_taurus +UMD3.1.72.reference : ftp://ftp.ensembl.org/pub/release-72/gtf/ + +WBcel235.72.genome : Caenorhabditis_elegans +WBcel235.72.reference : ftp://ftp.ensembl.org/pub/release-72/gtf/ + +C_jacchus3.2.1.72.genome : Callithrix_jacchus +C_jacchus3.2.1.72.reference : ftp://ftp.ensembl.org/pub/release-72/gtf/ + +CanFam3.1.72.genome : Canis_familiaris +CanFam3.1.72.reference : ftp://ftp.ensembl.org/pub/release-72/gtf/ + +cavPor3.72.genome : Cavia_porcellus +cavPor3.72.reference : ftp://ftp.ensembl.org/pub/release-72/gtf/ + +choHof1.72.genome : Choloepus_hoffmanni +choHof1.72.reference : ftp://ftp.ensembl.org/pub/release-72/gtf/ + +KH.72.genome : Ciona_intestinalis +KH.72.reference : ftp://ftp.ensembl.org/pub/release-72/gtf/ + +CSAV2.0.72.genome : Ciona_savignyi +CSAV2.0.72.reference : ftp://ftp.ensembl.org/pub/release-72/gtf/ + +Zv9.72.genome : Danio_rerio +Zv9.72.reference : ftp://ftp.ensembl.org/pub/release-72/gtf/ + +dasNov2.72.genome : Dasypus_novemcinctus +dasNov2.72.reference : ftp://ftp.ensembl.org/pub/release-72/gtf/ + +dipOrd1.72.genome : Dipodomys_ordii +dipOrd1.72.reference : ftp://ftp.ensembl.org/pub/release-72/gtf/ + +BDGP5.72.genome : Drosophila_melanogaster +BDGP5.72.reference : ftp://ftp.ensembl.org/pub/release-72/gtf/ + +TENREC.72.genome : Echinops_telfairi +TENREC.72.reference : ftp://ftp.ensembl.org/pub/release-72/gtf/ + +EquCab2.72.genome : Equus_caballus +EquCab2.72.reference : ftp://ftp.ensembl.org/pub/release-72/gtf/ + +HEDGEHOG.72.genome : Erinaceus_europaeus +HEDGEHOG.72.reference : ftp://ftp.ensembl.org/pub/release-72/gtf/ + +Felis_catus_6.2.72.genome : Felis_catus +Felis_catus_6.2.72.reference : ftp://ftp.ensembl.org/pub/release-72/gtf/ + +gadMor1.72.genome : Gadus_morhua +gadMor1.72.reference : ftp://ftp.ensembl.org/pub/release-72/gtf/ + +Galgal4.72.genome : Gallus_gallus +Galgal4.72.reference : ftp://ftp.ensembl.org/pub/release-72/gtf/ + +BROADS1.72.genome : Gasterosteus_aculeatus +BROADS1.72.reference : ftp://ftp.ensembl.org/pub/release-72/gtf/ + +gorGor3.1.72.genome : Gorilla_gorilla +gorGor3.1.72.reference : ftp://ftp.ensembl.org/pub/release-72/gtf/ + +GRCh37.72.genome : Homo_sapiens +GRCh37.72.reference : ftp://ftp.ensembl.org/pub/release-72/gtf/ + +spetri2.72.genome : Ictidomys_tridecemlineatus +spetri2.72.reference : ftp://ftp.ensembl.org/pub/release-72/gtf/ + +LatCha1.72.genome : Latimeria_chalumnae +LatCha1.72.reference : ftp://ftp.ensembl.org/pub/release-72/gtf/ + +loxAfr3.72.genome : Loxodonta_africana +loxAfr3.72.reference : ftp://ftp.ensembl.org/pub/release-72/gtf/ + +MMUL_1.72.genome : Macaca_mulatta +MMUL_1.72.reference : ftp://ftp.ensembl.org/pub/release-72/gtf/ + +Meug_1.0.72.genome : Macropus_eugenii +Meug_1.0.72.reference : ftp://ftp.ensembl.org/pub/release-72/gtf/ + +UMD2.72.genome : Meleagris_gallopavo +UMD2.72.reference : ftp://ftp.ensembl.org/pub/release-72/gtf/ + +micMur1.72.genome : Microcebus_murinus +micMur1.72.reference : ftp://ftp.ensembl.org/pub/release-72/gtf/ + +BROADO5.72.genome : Monodelphis_domestica +BROADO5.72.reference : ftp://ftp.ensembl.org/pub/release-72/gtf/ + +GRCm38.72.genome : Mus_musculus +GRCm38.72.reference : ftp://ftp.ensembl.org/pub/release-72/gtf/ + +MusPutFur1.0.72.genome : Mustela_putorius_furo +MusPutFur1.0.72.reference : ftp://ftp.ensembl.org/pub/release-72/gtf/ + +Myoluc2.0.72.genome : Myotis_lucifugus +Myoluc2.0.72.reference : ftp://ftp.ensembl.org/pub/release-72/gtf/ + +Nleu1.0.72.genome : Nomascus_leucogenys +Nleu1.0.72.reference : ftp://ftp.ensembl.org/pub/release-72/gtf/ + +pika.72.genome : Ochotona_princeps +pika.72.reference : ftp://ftp.ensembl.org/pub/release-72/gtf/ + +Orenil1.0.72.genome : Oreochromis_niloticus +Orenil1.0.72.reference : ftp://ftp.ensembl.org/pub/release-72/gtf/ + +OANA5.72.genome : Ornithorhynchus_anatinus +OANA5.72.reference : ftp://ftp.ensembl.org/pub/release-72/gtf/ + +oryCun2.72.genome : Oryctolagus_cuniculus +oryCun2.72.reference : ftp://ftp.ensembl.org/pub/release-72/gtf/ + +MEDAKA1.72.genome : Oryzias_latipes +MEDAKA1.72.reference : ftp://ftp.ensembl.org/pub/release-72/gtf/ + +OtoGar3.72.genome : Otolemur_garnettii +OtoGar3.72.reference : ftp://ftp.ensembl.org/pub/release-72/gtf/ + +CHIMP2.1.4.72.genome : Pan_troglodytes +CHIMP2.1.4.72.reference : ftp://ftp.ensembl.org/pub/release-72/gtf/ + +PelSin_1.0.72.genome : Pelodiscus_sinensis +PelSin_1.0.72.reference : ftp://ftp.ensembl.org/pub/release-72/gtf/ + +Pmarinus_7.0.72.genome : Petromyzon_marinus +Pmarinus_7.0.72.reference : ftp://ftp.ensembl.org/pub/release-72/gtf/ + +PPYG2.72.genome : Pongo_abelii +PPYG2.72.reference : ftp://ftp.ensembl.org/pub/release-72/gtf/ + +proCap1.72.genome : Procavia_capensis +proCap1.72.reference : ftp://ftp.ensembl.org/pub/release-72/gtf/ + +pteVam1.72.genome : Pteropus_vampyrus +pteVam1.72.reference : ftp://ftp.ensembl.org/pub/release-72/gtf/ + +Rnor_5.0.72.genome : Rattus_norvegicus +Rnor_5.0.72.reference : ftp://ftp.ensembl.org/pub/release-72/gtf/ + +EF4.72.genome : Saccharomyces_cerevisiae +EF4.72.reference : ftp://ftp.ensembl.org/pub/release-72/gtf/ + +DEVIL7.0.72.genome : Sarcophilus_harrisii +DEVIL7.0.72.reference : ftp://ftp.ensembl.org/pub/release-72/gtf/ + +COMMON_SHREW1.72.genome : Sorex_araneus +COMMON_SHREW1.72.reference : ftp://ftp.ensembl.org/pub/release-72/gtf/ + +Sscrofa10.2.72.genome : Sus_scrofa +Sscrofa10.2.72.reference : ftp://ftp.ensembl.org/pub/release-72/gtf/ + +taeGut3.2.4.72.genome : Taeniopygia_guttata +taeGut3.2.4.72.reference : ftp://ftp.ensembl.org/pub/release-72/gtf/ + +FUGU4.72.genome : Takifugu_rubripes +FUGU4.72.reference : ftp://ftp.ensembl.org/pub/release-72/gtf/ + +tarSyr1.72.genome : Tarsius_syrichta +tarSyr1.72.reference : ftp://ftp.ensembl.org/pub/release-72/gtf/ + +TETRAODON8.72.genome : Tetraodon_nigroviridis +TETRAODON8.72.reference : ftp://ftp.ensembl.org/pub/release-72/gtf/ + +TREESHREW.72.genome : Tupaia_belangeri +TREESHREW.72.reference : ftp://ftp.ensembl.org/pub/release-72/gtf/ + +turTru1.72.genome : Tursiops_truncatus +turTru1.72.reference : ftp://ftp.ensembl.org/pub/release-72/gtf/ + +vicPac1.72.genome : Vicugna_pacos +vicPac1.72.reference : ftp://ftp.ensembl.org/pub/release-72/gtf/ + +JGI_4.2.72.genome : Xenopus_tropicalis +JGI_4.2.72.reference : ftp://ftp.ensembl.org/pub/release-72/gtf/ + +Xipmac4.4.2.72.genome : Xiphophorus_maculatus +Xipmac4.4.2.72.reference : ftp://ftp.ensembl.org/pub/release-72/gtf/ + +# Mitochondrial chromosomes + +ailMel1.72.MT.codonTable : Vertebrate_Mitochondrial +AnoCar2.0.72.MT.codonTable : Vertebrate_Mitochondrial +BROADO5.72.MT.codonTable : Vertebrate_Mitochondrial +BROADS1.72.MT.codonTable : Vertebrate_Mitochondrial +CanFam3.1.72.MT.codonTable : Vertebrate_Mitochondrial +cavPor3.72.MT.codonTable : Vertebrate_Mitochondrial +CHIMP2.1.4.72.MT.codonTable : Vertebrate_Mitochondrial +DEVIL7.0.72.MT.codonTable : Vertebrate_Mitochondrial +EquCab2.72.MT.codonTable : Vertebrate_Mitochondrial +Felis_catus_6.2.72.MT.codonTable : Vertebrate_Mitochondrial +FUGU4.72.MT.codonTable : Vertebrate_Mitochondrial +Galgal4.72.MT.codonTable : Vertebrate_Mitochondrial +gorGor3.1.72.MT.codonTable : Vertebrate_Mitochondrial +GRCh37.72.MT.codonTable : Vertebrate_Mitochondrial +GRCm38.72.MT.codonTable : Vertebrate_Mitochondrial +HEDGEHOG.72.MT.codonTable : Vertebrate_Mitochondrial +KH.72.MT.codonTable : Vertebrate_Mitochondrial +LatCha1.72.MT.codonTable : Vertebrate_Mitochondrial +loxAfr3.72.MT.codonTable : Vertebrate_Mitochondrial +MEDAKA1.72.MT.codonTable : Vertebrate_Mitochondrial +MMUL_1.72.MT.codonTable : Vertebrate_Mitochondrial +OANA5.72.MT.codonTable : Vertebrate_Mitochondrial +oryCun2.72.MT.codonTable : Vertebrate_Mitochondrial +PelSin_1.0.72.MT.codonTable : Vertebrate_Mitochondrial +pika.72.MT.codonTable : Vertebrate_Mitochondrial +PPYG2.72.MT.codonTable : Vertebrate_Mitochondrial +proCap1.72.MT.codonTable : Vertebrate_Mitochondrial +Rnor_5.0.72.MT.codonTable : Vertebrate_Mitochondrial +Sscrofa10.2.72.MT.codonTable : Vertebrate_Mitochondrial +taeGut3.2.4.72.MT.codonTable : Vertebrate_Mitochondrial +tarSyr1.72.MT.codonTable : Vertebrate_Mitochondrial +TENREC.72.MT.codonTable : Vertebrate_Mitochondrial +TETRAODON8.72.MT.codonTable : Vertebrate_Mitochondrial +TREESHREW.72.MT.codonTable : Vertebrate_Mitochondrial +turTru1.72.MT.codonTable : Vertebrate_Mitochondrial +UMD2.72.MT.codonTable : Vertebrate_Mitochondrial +UMD3.1.72.MT.codonTable : Vertebrate_Mitochondrial +vicPac1.72.MT.codonTable : Vertebrate_Mitochondrial +Zv9.72.MT.codonTable : Vertebrate_Mitochondrial +BDGP5.72.dmel_mitochondrion_genome.codonTable : Invertebrate_Mitochondrial +EF4.72.Mito.codonTable : Vertebrate_Mitochondrial +WBcel235.72.MtDNA.codonTable : Invertebrate_Mitochondrial +#--- +# Ensembl 73 versions +#--- + +ailMel1.73.genome : Ailuropoda_melanoleuca +ailMel1.73.reference : ftp://ftp.ensembl.org/pub/release-73/gtf/ + +BGI_duck_1.0.73.genome : Anas_platyrhynchos +BGI_duck_1.0.73.reference : ftp://ftp.ensembl.org/pub/release-73/gtf/ + +AnoCar2.0.73.genome : Anolis_carolinensis +AnoCar2.0.73.reference : ftp://ftp.ensembl.org/pub/release-73/gtf/ + +UMD3.1.73.genome : Bos_taurus +UMD3.1.73.reference : ftp://ftp.ensembl.org/pub/release-73/gtf/ + +WBcel235.73.genome : Caenorhabditis_elegans +WBcel235.73.reference : ftp://ftp.ensembl.org/pub/release-73/gtf/ + +C_jacchus3.2.1.73.genome : Callithrix_jacchus +C_jacchus3.2.1.73.reference : ftp://ftp.ensembl.org/pub/release-73/gtf/ + +CanFam3.1.73.genome : Canis_familiaris +CanFam3.1.73.reference : ftp://ftp.ensembl.org/pub/release-73/gtf/ + +cavPor3.73.genome : Cavia_porcellus +cavPor3.73.reference : ftp://ftp.ensembl.org/pub/release-73/gtf/ + +choHof1.73.genome : Choloepus_hoffmanni +choHof1.73.reference : ftp://ftp.ensembl.org/pub/release-73/gtf/ + +KH.73.genome : Ciona_intestinalis +KH.73.reference : ftp://ftp.ensembl.org/pub/release-73/gtf/ + +CSAV2.0.73.genome : Ciona_savignyi +CSAV2.0.73.reference : ftp://ftp.ensembl.org/pub/release-73/gtf/ + +Zv9.73.genome : Danio_rerio +Zv9.73.reference : ftp://ftp.ensembl.org/pub/release-73/gtf/ + +dasNov2.73.genome : Dasypus_novemcinctus +dasNov2.73.reference : ftp://ftp.ensembl.org/pub/release-73/gtf/ + +dipOrd1.73.genome : Dipodomys_ordii +dipOrd1.73.reference : ftp://ftp.ensembl.org/pub/release-73/gtf/ + +BDGP5.73.genome : Drosophila_melanogaster +BDGP5.73.reference : ftp://ftp.ensembl.org/pub/release-73/gtf/ + +TENREC.73.genome : Echinops_telfairi +TENREC.73.reference : ftp://ftp.ensembl.org/pub/release-73/gtf/ + +EquCab2.73.genome : Equus_caballus +EquCab2.73.reference : ftp://ftp.ensembl.org/pub/release-73/gtf/ + +HEDGEHOG.73.genome : Erinaceus_europaeus +HEDGEHOG.73.reference : ftp://ftp.ensembl.org/pub/release-73/gtf/ + +Felis_catus_6.2.73.genome : Felis_catus +Felis_catus_6.2.73.reference : ftp://ftp.ensembl.org/pub/release-73/gtf/ + +FicAlb_1.4.73.genome : Ficedula_albicollis +FicAlb_1.4.73.reference : ftp://ftp.ensembl.org/pub/release-73/gtf/ + +gadMor1.73.genome : Gadus_morhua +gadMor1.73.reference : ftp://ftp.ensembl.org/pub/release-73/gtf/ + +Galgal4.73.genome : Gallus_gallus +Galgal4.73.reference : ftp://ftp.ensembl.org/pub/release-73/gtf/ + +BROADS1.73.genome : Gasterosteus_aculeatus +BROADS1.73.reference : ftp://ftp.ensembl.org/pub/release-73/gtf/ + +gorGor3.1.73.genome : Gorilla_gorilla +gorGor3.1.73.reference : ftp://ftp.ensembl.org/pub/release-73/gtf/ + +GRCh37.73.genome : Homo_sapiens +GRCh37.73.reference : ftp://ftp.ensembl.org/pub/release-73/gtf/ +GRCh37.73.MT.codonTable : Vertebrate_Mitochondrial + +spetri2.73.genome : Ictidomys_tridecemlineatus +spetri2.73.reference : ftp://ftp.ensembl.org/pub/release-73/gtf/ + +LatCha1.73.genome : Latimeria_chalumnae +LatCha1.73.reference : ftp://ftp.ensembl.org/pub/release-73/gtf/ + +loxAfr3.73.genome : Loxodonta_africana +loxAfr3.73.reference : ftp://ftp.ensembl.org/pub/release-73/gtf/ + +MMUL_1.73.genome : Macaca_mulatta +MMUL_1.73.reference : ftp://ftp.ensembl.org/pub/release-73/gtf/ + +Meug_1.0.73.genome : Macropus_eugenii +Meug_1.0.73.reference : ftp://ftp.ensembl.org/pub/release-73/gtf/ + +UMD2.73.genome : Meleagris_gallopavo +UMD2.73.reference : ftp://ftp.ensembl.org/pub/release-73/gtf/ + +micMur1.73.genome : Microcebus_murinus +micMur1.73.reference : ftp://ftp.ensembl.org/pub/release-73/gtf/ + +BROADO5.73.genome : Monodelphis_domestica +BROADO5.73.reference : ftp://ftp.ensembl.org/pub/release-73/gtf/ + +GRCm38.73.genome : Mus_musculus +GRCm38.73.reference : ftp://ftp.ensembl.org/pub/release-73/gtf/ + +MusPutFur1.0.73.genome : Mustela_putorius_furo +MusPutFur1.0.73.reference : ftp://ftp.ensembl.org/pub/release-73/gtf/ + +Myoluc2.0.73.genome : Myotis_lucifugus +Myoluc2.0.73.reference : ftp://ftp.ensembl.org/pub/release-73/gtf/ + +Nleu1.0.73.genome : Nomascus_leucogenys +Nleu1.0.73.reference : ftp://ftp.ensembl.org/pub/release-73/gtf/ + +pika.73.genome : Ochotona_princeps +pika.73.reference : ftp://ftp.ensembl.org/pub/release-73/gtf/ + +Orenil1.0.73.genome : Oreochromis_niloticus +Orenil1.0.73.reference : ftp://ftp.ensembl.org/pub/release-73/gtf/ + +OANA5.73.genome : Ornithorhynchus_anatinus +OANA5.73.reference : ftp://ftp.ensembl.org/pub/release-73/gtf/ + +OryCun2.0.73.genome : Oryctolagus_cuniculus +OryCun2.0.73.reference : ftp://ftp.ensembl.org/pub/release-73/gtf/ + +MEDAKA1.73.genome : Oryzias_latipes +MEDAKA1.73.reference : ftp://ftp.ensembl.org/pub/release-73/gtf/ + +OtoGar3.73.genome : Otolemur_garnettii +OtoGar3.73.reference : ftp://ftp.ensembl.org/pub/release-73/gtf/ + +CHIMP2.1.4.73.genome : Pan_troglodytes +CHIMP2.1.4.73.reference : ftp://ftp.ensembl.org/pub/release-73/gtf/ + +PelSin_1.0.73.genome : Pelodiscus_sinensis +PelSin_1.0.73.reference : ftp://ftp.ensembl.org/pub/release-73/gtf/ + +Pmarinus_7.0.73.genome : Petromyzon_marinus +Pmarinus_7.0.73.reference : ftp://ftp.ensembl.org/pub/release-73/gtf/ + +PPYG2.73.genome : Pongo_abelii +PPYG2.73.reference : ftp://ftp.ensembl.org/pub/release-73/gtf/ + +proCap1.73.genome : Procavia_capensis +proCap1.73.reference : ftp://ftp.ensembl.org/pub/release-73/gtf/ + +pteVam1.73.genome : Pteropus_vampyrus +pteVam1.73.reference : ftp://ftp.ensembl.org/pub/release-73/gtf/ + +Rnor_5.0.73.genome : Rattus_norvegicus +Rnor_5.0.73.reference : ftp://ftp.ensembl.org/pub/release-73/gtf/ + +EF4.73.genome : Saccharomyces_cerevisiae +EF4.73.reference : ftp://ftp.ensembl.org/pub/release-73/gtf/ + +DEVIL7.0.73.genome : Sarcophilus_harrisii +DEVIL7.0.73.reference : ftp://ftp.ensembl.org/pub/release-73/gtf/ + +COMMON_SHREW1.73.genome : Sorex_araneus +COMMON_SHREW1.73.reference : ftp://ftp.ensembl.org/pub/release-73/gtf/ + +Sscrofa10.2.73.genome : Sus_scrofa +Sscrofa10.2.73.reference : ftp://ftp.ensembl.org/pub/release-73/gtf/ + +taeGut3.2.4.73.genome : Taeniopygia_guttata +taeGut3.2.4.73.reference : ftp://ftp.ensembl.org/pub/release-73/gtf/ + +FUGU4.73.genome : Takifugu_rubripes +FUGU4.73.reference : ftp://ftp.ensembl.org/pub/release-73/gtf/ + +tarSyr1.73.genome : Tarsius_syrichta +tarSyr1.73.reference : ftp://ftp.ensembl.org/pub/release-73/gtf/ + +TETRAODON8.73.genome : Tetraodon_nigroviridis +TETRAODON8.73.reference : ftp://ftp.ensembl.org/pub/release-73/gtf/ + +TREESHREW.73.genome : Tupaia_belangeri +TREESHREW.73.reference : ftp://ftp.ensembl.org/pub/release-73/gtf/ + +turTru1.73.genome : Tursiops_truncatus +turTru1.73.reference : ftp://ftp.ensembl.org/pub/release-73/gtf/ + +vicPac1.73.genome : Vicugna_pacos +vicPac1.73.reference : ftp://ftp.ensembl.org/pub/release-73/gtf/ + +JGI_4.2.73.genome : Xenopus_tropicalis +JGI_4.2.73.reference : ftp://ftp.ensembl.org/pub/release-73/gtf/ + +Xipmac4.4.2.73.genome : Xiphophorus_maculatus +Xipmac4.4.2.73.reference : ftp://ftp.ensembl.org/pub/release-73/gtf/ + +# Mitochondrial chromosomes + +#--- +# Ensembl 74 versions +#--- + +ailMel1.74.genome : Ailuropoda_melanoleuca +ailMel1.74.reference : ftp://ftp.ensembl.org/pub/release-74/gtf/ + +BGI_duck_1.0.74.genome : Anas_platyrhynchos +BGI_duck_1.0.74.reference : ftp://ftp.ensembl.org/pub/release-74/gtf/ + +AnoCar2.0.74.genome : Anolis_carolinensis +AnoCar2.0.74.reference : ftp://ftp.ensembl.org/pub/release-74/gtf/ + +AstMex102.74.genome : Astyanax_mexicanus +AstMex102.74.reference : ftp://ftp.ensembl.org/pub/release-74/gtf/ + +UMD3.1.74.genome : Bos_taurus +UMD3.1.74.reference : ftp://ftp.ensembl.org/pub/release-74/gtf/ + +WBcel235.74.genome : Caenorhabditis_elegans +WBcel235.74.reference : ftp://ftp.ensembl.org/pub/release-74/gtf/ + +C_jacchus3.2.1.74.genome : Callithrix_jacchus +C_jacchus3.2.1.74.reference : ftp://ftp.ensembl.org/pub/release-74/gtf/ + +CanFam3.1.74.genome : Canis_familiaris +CanFam3.1.74.reference : ftp://ftp.ensembl.org/pub/release-74/gtf/ + +cavPor3.74.genome : Cavia_porcellus +cavPor3.74.reference : ftp://ftp.ensembl.org/pub/release-74/gtf/ + +choHof1.74.genome : Choloepus_hoffmanni +choHof1.74.reference : ftp://ftp.ensembl.org/pub/release-74/gtf/ + +KH.74.genome : Ciona_intestinalis +KH.74.reference : ftp://ftp.ensembl.org/pub/release-74/gtf/ + +CSAV2.0.74.genome : Ciona_savignyi +CSAV2.0.74.reference : ftp://ftp.ensembl.org/pub/release-74/gtf/ + +Zv9.74.genome : Danio_rerio +Zv9.74.reference : ftp://ftp.ensembl.org/pub/release-74/gtf/ + +Dasnov3.0.74.genome : Dasypus_novemcinctus +Dasnov3.0.74.reference : ftp://ftp.ensembl.org/pub/release-74/gtf/ + +dipOrd1.74.genome : Dipodomys_ordii +dipOrd1.74.reference : ftp://ftp.ensembl.org/pub/release-74/gtf/ + +BDGP5.74.genome : Drosophila_melanogaster +BDGP5.74.reference : ftp://ftp.ensembl.org/pub/release-74/gtf/ + +TENREC.74.genome : Echinops_telfairi +TENREC.74.reference : ftp://ftp.ensembl.org/pub/release-74/gtf/ + +EquCab2.74.genome : Equus_caballus +EquCab2.74.reference : ftp://ftp.ensembl.org/pub/release-74/gtf/ + +HEDGEHOG.74.genome : Erinaceus_europaeus +HEDGEHOG.74.reference : ftp://ftp.ensembl.org/pub/release-74/gtf/ + +Felis_catus_6.2.74.genome : Felis_catus +Felis_catus_6.2.74.reference : ftp://ftp.ensembl.org/pub/release-74/gtf/ + +FicAlb_1.4.74.genome : Ficedula_albicollis +FicAlb_1.4.74.reference : ftp://ftp.ensembl.org/pub/release-74/gtf/ + +gadMor1.74.genome : Gadus_morhua +gadMor1.74.reference : ftp://ftp.ensembl.org/pub/release-74/gtf/ + +Galgal4.74.genome : Gallus_gallus +Galgal4.74.reference : ftp://ftp.ensembl.org/pub/release-74/gtf/ + +BROADS1.74.genome : Gasterosteus_aculeatus +BROADS1.74.reference : ftp://ftp.ensembl.org/pub/release-74/gtf/ + +gorGor3.1.74.genome : Gorilla_gorilla +gorGor3.1.74.reference : ftp://ftp.ensembl.org/pub/release-74/gtf/ + +GRCh37.74.genome : Homo_sapiens +GRCh37.74.reference : ftp://ftp.ensembl.org/pub/release-74/gtf/ + +spetri2.74.genome : Ictidomys_tridecemlineatus +spetri2.74.reference : ftp://ftp.ensembl.org/pub/release-74/gtf/ + +LatCha1.74.genome : Latimeria_chalumnae +LatCha1.74.reference : ftp://ftp.ensembl.org/pub/release-74/gtf/ + +LepOcu1.74.genome : Lepisosteus_oculatus +LepOcu1.74.reference : ftp://ftp.ensembl.org/pub/release-74/gtf/ + +loxAfr3.74.genome : Loxodonta_africana +loxAfr3.74.reference : ftp://ftp.ensembl.org/pub/release-74/gtf/ + +MMUL_1.74.genome : Macaca_mulatta +MMUL_1.74.reference : ftp://ftp.ensembl.org/pub/release-74/gtf/ + +Meug_1.0.74.genome : Macropus_eugenii +Meug_1.0.74.reference : ftp://ftp.ensembl.org/pub/release-74/gtf/ + +UMD2.74.genome : Meleagris_gallopavo +UMD2.74.reference : ftp://ftp.ensembl.org/pub/release-74/gtf/ + +micMur1.74.genome : Microcebus_murinus +micMur1.74.reference : ftp://ftp.ensembl.org/pub/release-74/gtf/ + +BROADO5.74.genome : Monodelphis_domestica +BROADO5.74.reference : ftp://ftp.ensembl.org/pub/release-74/gtf/ + +GRCm38.74.genome : Mus_musculus +GRCm38.74.reference : ftp://ftp.ensembl.org/pub/release-74/gtf/ + +MusPutFur1.0.74.genome : Mustela_putorius_furo +MusPutFur1.0.74.reference : ftp://ftp.ensembl.org/pub/release-74/gtf/ + +Myoluc2.0.74.genome : Myotis_lucifugus +Myoluc2.0.74.reference : ftp://ftp.ensembl.org/pub/release-74/gtf/ + +Nleu1.0.74.genome : Nomascus_leucogenys +Nleu1.0.74.reference : ftp://ftp.ensembl.org/pub/release-74/gtf/ + +pika.74.genome : Ochotona_princeps +pika.74.reference : ftp://ftp.ensembl.org/pub/release-74/gtf/ + +Orenil1.0.74.genome : Oreochromis_niloticus +Orenil1.0.74.reference : ftp://ftp.ensembl.org/pub/release-74/gtf/ + +OANA5.74.genome : Ornithorhynchus_anatinus +OANA5.74.reference : ftp://ftp.ensembl.org/pub/release-74/gtf/ + +OryCun2.0.74.genome : Oryctolagus_cuniculus +OryCun2.0.74.reference : ftp://ftp.ensembl.org/pub/release-74/gtf/ + +MEDAKA1.74.genome : Oryzias_latipes +MEDAKA1.74.reference : ftp://ftp.ensembl.org/pub/release-74/gtf/ + +OtoGar3.74.genome : Otolemur_garnettii +OtoGar3.74.reference : ftp://ftp.ensembl.org/pub/release-74/gtf/ + +Oar_v3.1.74.genome : Ovis_aries +Oar_v3.1.74.reference : ftp://ftp.ensembl.org/pub/release-74/gtf/ + +CHIMP2.1.4.74.genome : Pan_troglodytes +CHIMP2.1.4.74.reference : ftp://ftp.ensembl.org/pub/release-74/gtf/ + +PelSin_1.0.74.genome : Pelodiscus_sinensis +PelSin_1.0.74.reference : ftp://ftp.ensembl.org/pub/release-74/gtf/ + +Pmarinus_7.0.74.genome : Petromyzon_marinus +Pmarinus_7.0.74.reference : ftp://ftp.ensembl.org/pub/release-74/gtf/ + +PPYG2.74.genome : Pongo_abelii +PPYG2.74.reference : ftp://ftp.ensembl.org/pub/release-74/gtf/ + +proCap1.74.genome : Procavia_capensis +proCap1.74.reference : ftp://ftp.ensembl.org/pub/release-74/gtf/ + +pteVam1.74.genome : Pteropus_vampyrus +pteVam1.74.reference : ftp://ftp.ensembl.org/pub/release-74/gtf/ + +Rnor_5.0.74.genome : Rattus_norvegicus +Rnor_5.0.74.reference : ftp://ftp.ensembl.org/pub/release-74/gtf/ + +EF4.74.genome : Saccharomyces_cerevisiae +EF4.74.reference : ftp://ftp.ensembl.org/pub/release-74/gtf/ + +DEVIL7.0.74.genome : Sarcophilus_harrisii +DEVIL7.0.74.reference : ftp://ftp.ensembl.org/pub/release-74/gtf/ + +COMMON_SHREW1.74.genome : Sorex_araneus +COMMON_SHREW1.74.reference : ftp://ftp.ensembl.org/pub/release-74/gtf/ + +Sscrofa10.2.74.genome : Sus_scrofa +Sscrofa10.2.74.reference : ftp://ftp.ensembl.org/pub/release-74/gtf/ + +taeGut3.2.4.74.genome : Taeniopygia_guttata +taeGut3.2.4.74.reference : ftp://ftp.ensembl.org/pub/release-74/gtf/ + +FUGU4.74.genome : Takifugu_rubripes +FUGU4.74.reference : ftp://ftp.ensembl.org/pub/release-74/gtf/ + +tarSyr1.74.genome : Tarsius_syrichta +tarSyr1.74.reference : ftp://ftp.ensembl.org/pub/release-74/gtf/ + +TETRAODON8.74.genome : Tetraodon_nigroviridis +TETRAODON8.74.reference : ftp://ftp.ensembl.org/pub/release-74/gtf/ + +TREESHREW.74.genome : Tupaia_belangeri +TREESHREW.74.reference : ftp://ftp.ensembl.org/pub/release-74/gtf/ + +turTru1.74.genome : Tursiops_truncatus +turTru1.74.reference : ftp://ftp.ensembl.org/pub/release-74/gtf/ + +vicPac1.74.genome : Vicugna_pacos +vicPac1.74.reference : ftp://ftp.ensembl.org/pub/release-74/gtf/ + +JGI_4.2.74.genome : Xenopus_tropicalis +JGI_4.2.74.reference : ftp://ftp.ensembl.org/pub/release-74/gtf/ + +Xipmac4.4.2.74.genome : Xiphophorus_maculatus +Xipmac4.4.2.74.reference : ftp://ftp.ensembl.org/pub/release-74/gtf/ + +# Mitochondrial chromosomes + +GRCh37.74.MT.codonTable : Vertebrate_Mitochondrial +#--- +# Ensembl 75 versions +#--- + +ailMel1.75.genome : Ailuropoda_melanoleuca +ailMel1.75.reference : ftp://ftp.ensembl.org/pub/release-75/gtf/ + +BGI_duck_1.0.75.genome : Anas_platyrhynchos +BGI_duck_1.0.75.reference : ftp://ftp.ensembl.org/pub/release-75/gtf/ + +AnoCar2.0.75.genome : Anolis_carolinensis +AnoCar2.0.75.reference : ftp://ftp.ensembl.org/pub/release-75/gtf/ + +AstMex102.75.genome : Astyanax_mexicanus +AstMex102.75.reference : ftp://ftp.ensembl.org/pub/release-75/gtf/ + +UMD3.1.75.genome : Bos_taurus +UMD3.1.75.reference : ftp://ftp.ensembl.org/pub/release-75/gtf/ + +WBcel235.75.genome : Caenorhabditis_elegans +WBcel235.75.reference : ftp://ftp.ensembl.org/pub/release-75/gtf/ + +C_jacchus3.2.1.75.genome : Callithrix_jacchus +C_jacchus3.2.1.75.reference : ftp://ftp.ensembl.org/pub/release-75/gtf/ + +CanFam3.1.75.genome : Canis_familiaris +CanFam3.1.75.reference : ftp://ftp.ensembl.org/pub/release-75/gtf/ + +cavPor3.75.genome : Cavia_porcellus +cavPor3.75.reference : ftp://ftp.ensembl.org/pub/release-75/gtf/ + +choHof1.75.genome : Choloepus_hoffmanni +choHof1.75.reference : ftp://ftp.ensembl.org/pub/release-75/gtf/ + +KH.75.genome : Ciona_intestinalis +KH.75.reference : ftp://ftp.ensembl.org/pub/release-75/gtf/ + +CSAV2.0.75.genome : Ciona_savignyi +CSAV2.0.75.reference : ftp://ftp.ensembl.org/pub/release-75/gtf/ + +Zv9.75.genome : Danio_rerio +Zv9.75.reference : ftp://ftp.ensembl.org/pub/release-75/gtf/ + +Dasnov3.0.75.genome : Dasypus_novemcinctus +Dasnov3.0.75.reference : ftp://ftp.ensembl.org/pub/release-75/gtf/ + +dipOrd1.75.genome : Dipodomys_ordii +dipOrd1.75.reference : ftp://ftp.ensembl.org/pub/release-75/gtf/ + +BDGP5.75.genome : Drosophila_melanogaster +BDGP5.75.reference : ftp://ftp.ensembl.org/pub/release-75/gtf/ + +TENREC.75.genome : Echinops_telfairi +TENREC.75.reference : ftp://ftp.ensembl.org/pub/release-75/gtf/ + +EquCab2.75.genome : Equus_caballus +EquCab2.75.reference : ftp://ftp.ensembl.org/pub/release-75/gtf/ + +HEDGEHOG.75.genome : Erinaceus_europaeus +HEDGEHOG.75.reference : ftp://ftp.ensembl.org/pub/release-75/gtf/ + +Felis_catus_6.2.75.genome : Felis_catus +Felis_catus_6.2.75.reference : ftp://ftp.ensembl.org/pub/release-75/gtf/ + +FicAlb_1.4.75.genome : Ficedula_albicollis +FicAlb_1.4.75.reference : ftp://ftp.ensembl.org/pub/release-75/gtf/ + +gadMor1.75.genome : Gadus_morhua +gadMor1.75.reference : ftp://ftp.ensembl.org/pub/release-75/gtf/ + +Galgal4.75.genome : Gallus_gallus +Galgal4.75.reference : ftp://ftp.ensembl.org/pub/release-75/gtf/ + +BROADS1.75.genome : Gasterosteus_aculeatus +BROADS1.75.reference : ftp://ftp.ensembl.org/pub/release-75/gtf/ + +gorGor3.1.75.genome : Gorilla_gorilla +gorGor3.1.75.reference : ftp://ftp.ensembl.org/pub/release-75/gtf/ + +GRCh37.75.genome : Homo_sapiens +GRCh37.75.reference : ftp://ftp.ensembl.org/pub/release-75/gtf/ + +spetri2.75.genome : Ictidomys_tridecemlineatus +spetri2.75.reference : ftp://ftp.ensembl.org/pub/release-75/gtf/ + +LatCha1.75.genome : Latimeria_chalumnae +LatCha1.75.reference : ftp://ftp.ensembl.org/pub/release-75/gtf/ + +LepOcu1.75.genome : Lepisosteus_oculatus +LepOcu1.75.reference : ftp://ftp.ensembl.org/pub/release-75/gtf/ + +loxAfr3.75.genome : Loxodonta_africana +loxAfr3.75.reference : ftp://ftp.ensembl.org/pub/release-75/gtf/ + +MMUL_1.75.genome : Macaca_mulatta +MMUL_1.75.reference : ftp://ftp.ensembl.org/pub/release-75/gtf/ + +Meug_1.0.75.genome : Macropus_eugenii +Meug_1.0.75.reference : ftp://ftp.ensembl.org/pub/release-75/gtf/ + +UMD2.75.genome : Meleagris_gallopavo +UMD2.75.reference : ftp://ftp.ensembl.org/pub/release-75/gtf/ + +micMur1.75.genome : Microcebus_murinus +micMur1.75.reference : ftp://ftp.ensembl.org/pub/release-75/gtf/ + +BROADO5.75.genome : Monodelphis_domestica +BROADO5.75.reference : ftp://ftp.ensembl.org/pub/release-75/gtf/ + +GRCm38.75.genome : Mus_musculus +GRCm38.75.reference : ftp://ftp.ensembl.org/pub/release-75/gtf/ + +MusPutFur1.0.75.genome : Mustela_putorius_furo +MusPutFur1.0.75.reference : ftp://ftp.ensembl.org/pub/release-75/gtf/ + +Myoluc2.0.75.genome : Myotis_lucifugus +Myoluc2.0.75.reference : ftp://ftp.ensembl.org/pub/release-75/gtf/ + +Nleu1.0.75.genome : Nomascus_leucogenys +Nleu1.0.75.reference : ftp://ftp.ensembl.org/pub/release-75/gtf/ + +pika.75.genome : Ochotona_princeps +pika.75.reference : ftp://ftp.ensembl.org/pub/release-75/gtf/ + +Orenil1.0.75.genome : Oreochromis_niloticus +Orenil1.0.75.reference : ftp://ftp.ensembl.org/pub/release-75/gtf/ + +OANA5.75.genome : Ornithorhynchus_anatinus +OANA5.75.reference : ftp://ftp.ensembl.org/pub/release-75/gtf/ + +OryCun2.0.75.genome : Oryctolagus_cuniculus +OryCun2.0.75.reference : ftp://ftp.ensembl.org/pub/release-75/gtf/ + +MEDAKA1.75.genome : Oryzias_latipes +MEDAKA1.75.reference : ftp://ftp.ensembl.org/pub/release-75/gtf/ + +OtoGar3.75.genome : Otolemur_garnettii +OtoGar3.75.reference : ftp://ftp.ensembl.org/pub/release-75/gtf/ + +Oar_v3.1.75.genome : Ovis_aries +Oar_v3.1.75.reference : ftp://ftp.ensembl.org/pub/release-75/gtf/ + +CHIMP2.1.4.75.genome : Pan_troglodytes +CHIMP2.1.4.75.reference : ftp://ftp.ensembl.org/pub/release-75/gtf/ + +PelSin_1.0.75.genome : Pelodiscus_sinensis +PelSin_1.0.75.reference : ftp://ftp.ensembl.org/pub/release-75/gtf/ + +Pmarinus_7.0.75.genome : Petromyzon_marinus +Pmarinus_7.0.75.reference : ftp://ftp.ensembl.org/pub/release-75/gtf/ + +PPYG2.75.genome : Pongo_abelii +PPYG2.75.reference : ftp://ftp.ensembl.org/pub/release-75/gtf/ + +proCap1.75.genome : Procavia_capensis +proCap1.75.reference : ftp://ftp.ensembl.org/pub/release-75/gtf/ + +pteVam1.75.genome : Pteropus_vampyrus +pteVam1.75.reference : ftp://ftp.ensembl.org/pub/release-75/gtf/ + +Rnor_5.0.75.genome : Rattus_norvegicus +Rnor_5.0.75.reference : ftp://ftp.ensembl.org/pub/release-75/gtf/ + +R64-1-1.75.genome : Saccharomyces_cerevisiae +R64-1-1.75.reference : ftp://ftp.ensembl.org/pub/release-75/gtf/ + +DEVIL7.0.75.genome : Sarcophilus_harrisii +DEVIL7.0.75.reference : ftp://ftp.ensembl.org/pub/release-75/gtf/ + +COMMON_SHREW1.75.genome : Sorex_araneus +COMMON_SHREW1.75.reference : ftp://ftp.ensembl.org/pub/release-75/gtf/ + +Sscrofa10.2.75.genome : Sus_scrofa +Sscrofa10.2.75.reference : ftp://ftp.ensembl.org/pub/release-75/gtf/ + +taeGut3.2.4.75.genome : Taeniopygia_guttata +taeGut3.2.4.75.reference : ftp://ftp.ensembl.org/pub/release-75/gtf/ + +FUGU4.75.genome : Takifugu_rubripes +FUGU4.75.reference : ftp://ftp.ensembl.org/pub/release-75/gtf/ + +tarSyr1.75.genome : Tarsius_syrichta +tarSyr1.75.reference : ftp://ftp.ensembl.org/pub/release-75/gtf/ + +TETRAODON8.75.genome : Tetraodon_nigroviridis +TETRAODON8.75.reference : ftp://ftp.ensembl.org/pub/release-75/gtf/ + +TREESHREW.75.genome : Tupaia_belangeri +TREESHREW.75.reference : ftp://ftp.ensembl.org/pub/release-75/gtf/ + +turTru1.75.genome : Tursiops_truncatus +turTru1.75.reference : ftp://ftp.ensembl.org/pub/release-75/gtf/ + +vicPac1.75.genome : Vicugna_pacos +vicPac1.75.reference : ftp://ftp.ensembl.org/pub/release-75/gtf/ + +JGI_4.2.75.genome : Xenopus_tropicalis +JGI_4.2.75.reference : ftp://ftp.ensembl.org/pub/release-75/gtf/ + +Xipmac4.4.2.75.genome : Xiphophorus_maculatus +Xipmac4.4.2.75.reference : ftp://ftp.ensembl.org/pub/release-75/gtf/ + +ailMel1.76.genome : Ailuropoda_melanoleuca +ailMel1.76.reference : ftp://ftp.ensembl.org/pub/release-76/gtf/ + +BGI_duck_1.0.76.genome : Anas_platyrhynchos +BGI_duck_1.0.76.reference : ftp://ftp.ensembl.org/pub/release-76/gtf/ + +AnoCar2.0.76.genome : Anolis_carolinensis +AnoCar2.0.76.reference : ftp://ftp.ensembl.org/pub/release-76/gtf/ + +AstMex102.76.genome : Astyanax_mexicanus +AstMex102.76.reference : ftp://ftp.ensembl.org/pub/release-76/gtf/ + +UMD3.1.76.genome : Bos_taurus +UMD3.1.76.reference : ftp://ftp.ensembl.org/pub/release-76/gtf/ + +WBcel235.76.genome : Caenorhabditis_elegans +WBcel235.76.reference : ftp://ftp.ensembl.org/pub/release-76/gtf/ + +C_jacchus3.2.1.76.genome : Callithrix_jacchus +C_jacchus3.2.1.76.reference : ftp://ftp.ensembl.org/pub/release-76/gtf/ + +CanFam3.1.76.genome : Canis_familiaris +CanFam3.1.76.reference : ftp://ftp.ensembl.org/pub/release-76/gtf/ + +cavPor3.76.genome : Cavia_porcellus +cavPor3.76.reference : ftp://ftp.ensembl.org/pub/release-76/gtf/ + +choHof1.76.genome : Choloepus_hoffmanni +choHof1.76.reference : ftp://ftp.ensembl.org/pub/release-76/gtf/ + +KH.76.genome : Ciona_intestinalis +KH.76.reference : ftp://ftp.ensembl.org/pub/release-76/gtf/ + +CSAV2.0.76.genome : Ciona_savignyi +CSAV2.0.76.reference : ftp://ftp.ensembl.org/pub/release-76/gtf/ + +Zv9.76.genome : Danio_rerio +Zv9.76.reference : ftp://ftp.ensembl.org/pub/release-76/gtf/ + +Dasnov3.0.76.genome : Dasypus_novemcinctus +Dasnov3.0.76.reference : ftp://ftp.ensembl.org/pub/release-76/gtf/ + +dipOrd1.76.genome : Dipodomys_ordii +dipOrd1.76.reference : ftp://ftp.ensembl.org/pub/release-76/gtf/ + +BDGP5.76.genome : Drosophila_melanogaster +BDGP5.76.reference : ftp://ftp.ensembl.org/pub/release-76/gtf/ + +TENREC.76.genome : Echinops_telfairi +TENREC.76.reference : ftp://ftp.ensembl.org/pub/release-76/gtf/ + +EquCab2.76.genome : Equus_caballus +EquCab2.76.reference : ftp://ftp.ensembl.org/pub/release-76/gtf/ + +HEDGEHOG.76.genome : Erinaceus_europaeus +HEDGEHOG.76.reference : ftp://ftp.ensembl.org/pub/release-76/gtf/ + +Felis_catus_6.2.76.genome : Felis_catus +Felis_catus_6.2.76.reference : ftp://ftp.ensembl.org/pub/release-76/gtf/ + +FicAlb_1.4.76.genome : Ficedula_albicollis +FicAlb_1.4.76.reference : ftp://ftp.ensembl.org/pub/release-76/gtf/ + +gadMor1.76.genome : Gadus_morhua +gadMor1.76.reference : ftp://ftp.ensembl.org/pub/release-76/gtf/ + +Galgal4.76.genome : Gallus_gallus +Galgal4.76.reference : ftp://ftp.ensembl.org/pub/release-76/gtf/ + +BROADS1.76.genome : Gasterosteus_aculeatus +BROADS1.76.reference : ftp://ftp.ensembl.org/pub/release-76/gtf/ + +gorGor3.1.76.genome : Gorilla_gorilla +gorGor3.1.76.reference : ftp://ftp.ensembl.org/pub/release-76/gtf/ + +GRCh38.76.genome : Homo_sapiens +GRCh38.76.reference : ftp://ftp.ensembl.org/pub/release-76/gtf/ + +spetri2.76.genome : Ictidomys_tridecemlineatus +spetri2.76.reference : ftp://ftp.ensembl.org/pub/release-76/gtf/ + +LatCha1.76.genome : Latimeria_chalumnae +LatCha1.76.reference : ftp://ftp.ensembl.org/pub/release-76/gtf/ + +LepOcu1.76.genome : Lepisosteus_oculatus +LepOcu1.76.reference : ftp://ftp.ensembl.org/pub/release-76/gtf/ + +loxAfr3.76.genome : Loxodonta_africana +loxAfr3.76.reference : ftp://ftp.ensembl.org/pub/release-76/gtf/ + +MMUL_1.76.genome : Macaca_mulatta +MMUL_1.76.reference : ftp://ftp.ensembl.org/pub/release-76/gtf/ + +Meug_1.0.76.genome : Macropus_eugenii +Meug_1.0.76.reference : ftp://ftp.ensembl.org/pub/release-76/gtf/ + +UMD2.76.genome : Meleagris_gallopavo +UMD2.76.reference : ftp://ftp.ensembl.org/pub/release-76/gtf/ + +micMur1.76.genome : Microcebus_murinus +micMur1.76.reference : ftp://ftp.ensembl.org/pub/release-76/gtf/ + +BROADO5.76.genome : Monodelphis_domestica +BROADO5.76.reference : ftp://ftp.ensembl.org/pub/release-76/gtf/ + +GRCm38.76.genome : Mus_musculus +GRCm38.76.reference : ftp://ftp.ensembl.org/pub/release-76/gtf/ + +MusPutFur1.0.76.genome : Mustela_putorius_furo +MusPutFur1.0.76.reference : ftp://ftp.ensembl.org/pub/release-76/gtf/ + +Myoluc2.0.76.genome : Myotis_lucifugus +Myoluc2.0.76.reference : ftp://ftp.ensembl.org/pub/release-76/gtf/ + +Nleu1.0.76.genome : Nomascus_leucogenys +Nleu1.0.76.reference : ftp://ftp.ensembl.org/pub/release-76/gtf/ + +pika.76.genome : Ochotona_princeps +pika.76.reference : ftp://ftp.ensembl.org/pub/release-76/gtf/ + +Orenil1.0.76.genome : Oreochromis_niloticus +Orenil1.0.76.reference : ftp://ftp.ensembl.org/pub/release-76/gtf/ + +OANA5.76.genome : Ornithorhynchus_anatinus +OANA5.76.reference : ftp://ftp.ensembl.org/pub/release-76/gtf/ + +OryCun2.0.76.genome : Oryctolagus_cuniculus +OryCun2.0.76.reference : ftp://ftp.ensembl.org/pub/release-76/gtf/ + +MEDAKA1.76.genome : Oryzias_latipes +MEDAKA1.76.reference : ftp://ftp.ensembl.org/pub/release-76/gtf/ + +OtoGar3.76.genome : Otolemur_garnettii +OtoGar3.76.reference : ftp://ftp.ensembl.org/pub/release-76/gtf/ + +Oar_v3.1.76.genome : Ovis_aries +Oar_v3.1.76.reference : ftp://ftp.ensembl.org/pub/release-76/gtf/ + +CHIMP2.1.4.76.genome : Pan_troglodytes +CHIMP2.1.4.76.reference : ftp://ftp.ensembl.org/pub/release-76/gtf/ + +PapAnu2.0.76.genome : Papio_anubis +PapAnu2.0.76.reference : ftp://ftp.ensembl.org/pub/release-76/gtf/ + +PelSin_1.0.76.genome : Pelodiscus_sinensis +PelSin_1.0.76.reference : ftp://ftp.ensembl.org/pub/release-76/gtf/ + +Pmarinus_7.0.76.genome : Petromyzon_marinus +Pmarinus_7.0.76.reference : ftp://ftp.ensembl.org/pub/release-76/gtf/ + +PoeFor_5.1.2.76.genome : Poecilia_formosa +PoeFor_5.1.2.76.reference : ftp://ftp.ensembl.org/pub/release-76/gtf/ + +PPYG2.76.genome : Pongo_abelii +PPYG2.76.reference : ftp://ftp.ensembl.org/pub/release-76/gtf/ + +proCap1.76.genome : Procavia_capensis +proCap1.76.reference : ftp://ftp.ensembl.org/pub/release-76/gtf/ + +pteVam1.76.genome : Pteropus_vampyrus +pteVam1.76.reference : ftp://ftp.ensembl.org/pub/release-76/gtf/ + +Rnor_5.0.76.genome : Rattus_norvegicus +Rnor_5.0.76.reference : ftp://ftp.ensembl.org/pub/release-76/gtf/ + +R64-1-1.76.genome : Saccharomyces_cerevisiae +R64-1-1.76.reference : ftp://ftp.ensembl.org/pub/release-76/gtf/ + +DEVIL7.0.76.genome : Sarcophilus_harrisii +DEVIL7.0.76.reference : ftp://ftp.ensembl.org/pub/release-76/gtf/ + +COMMON_SHREW1.76.genome : Sorex_araneus +COMMON_SHREW1.76.reference : 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GCA_000184325.1.22 GCA_000496695.1.22 GCA_000182685.1.22 GCA_000259935.1.22 GCA_000222605.2.22 GCA_000176155.1.22 GCA_000338875.1.22 GCA_000176375.1.22 GCA_000222145.1.22 GCA_000176415.1.22 GCA_000175995.1.22 GCA_000175975.1.22 GCA_000169995.1.22 GCA_000417905.1.22 GCA_000222685.2.22 GCA_000176235.1.22 GCA_000222645.2.22 GCA_000454205.1.22 GCA_000500105.1.22 GCA_000195415.2.22 GCA_000500755.1.22 GCA_000454245.1.22 GCA_000454455.1.22 GCA_000510605.1.22 GCA_000182385.1.22 GCA_000154045.1.22 GCA_000182365.1.22 GCA_000516875.1.22 GCA_000328405.1.22 GCA_000510585.1.22 GCA_000182465.1.22 GCA_000454265.1.22 GCA_000477475.1.22 GCA_000430425.1.22 GCA_000430405.1.22 GCA_000182345.1.22 GCA_000196095.1.22 GCA_000454165.1.22 GCA_000454185.1.22 GCA_000454225.1.22 GCA_000454475.1.22 GCA_000454145.1.22 GCA_000467125.1.22 GCA_000222585.2.22 GCA_000181535.1.22 GCA_000189275.2.22 GCA_000158115.1.22 GCA_000171815.1.22 GCA_000241385.1.22 GCA_000152485.1.22 GCA_000024825.1.22 GCA_000305715.1.22 GCA_000305735.1.22 GCA_000305755.1.22 GCA_000152765.1.22 GCA_000222625.2.22 GCA_000091465.1.22 GCA_000153005.1.22 GCA_000222565.2.22 GCA_000176215.1.22 GCA_000176715.1.22 GCA_000222665.2.22 GCA_000259295.1.22 GCA_000039765.1.22 GCA_000186585.1.22 GCA_000009745.1.22 GCA_000445495.1.22 GCA_000148385.1.22 GCA_000190315.1.22 +ENSEMBL_BFMPP_22_124.bundle : GCA_000092785.1.22 GCA_000189415.1.22 GCA_000320345.1.22 GCA_000239955.2.22 GCA_000219805.1.22 GCA_000277645.1.22 GCA_000160575.1.22 GCA_000008885.1.22 GCA_000247565.1.22 GCA_000506245.1.22 GCA_000427335.1.22 GCA_000334955.1.22 GCA_000156735.1.22 GCA_000073005.1.22 GCA_000167475.1.22 GCA_000008025.1.22 GCA_000167495.1.22 GCA_000376605.1.22 GCA_000376585.1.22 GCA_000174095.1.22 GCA_000306885.1.22 GCA_000008385.1.22 GCA_000242415.3.22 GCA_000475015.1.22 GCA_000022285.1.22 GCA_000196135.1.22 GCA_000017645.1.22 GCA_000087965.1.22 GCA_000007165.1.22 GCA_000225915.1.22 GCA_000309905.1.22 GCA_000309925.1.22 GCA_000285775.1.22 GCA_000348585.1.22 GCA_000070605.1.22 GCA_000012105.1.22 GCA_000007145.1.22 GCA_000221965.1.22 GCA_000009165.1.22 GCA_000263335.1.22 GCA_000349225.1.22 GCA_000376745.1.22 GCA_000175155.1.22 GCA_000175135.1.22 GCA_000192065.2.22 GCA_000505565.1.22 GCA_000007385.1.22 GCA_000010025.1.22 GCA_000019585.1.22 GCA_000168315.2.22 GCA_000192045.2.22 GCA_000334075.1.22 GCA_000313775.1.22 GCA_000331775.1.22 GCA_000332055.1.22 GCA_000027225.1.22 GCA_000252955.1.22 GCA_000389595.1.22 GCA_000024965.1.22 GCA_000506405.1.22 GCA_000506905.1.22 GCA_000006725.1.22 GCA_000166835.1.22 GCA_000219235.2.22 GCA_000019325.1.22 GCA_000019765.1.22 GCA_000148405.1.22 GCA_000466025.1.22 GCA_000007245.1.22 GCA_000002525.1.22 GCA_000173735.1.22 GCA_000167975.1.22 GCA_000330605.1.22 GCA_000009345.1.22 GCA_000297175.1.22 GCA_000192105.1.22 GCA_000230775.2.22 GCA_000253175.1.22 GCA_000401935.1.22 GCA_000401995.1.22 GCA_000401975.1.22 GCA_000401955.1.22 GCA_000168015.1.22 GCA_000168035.1.22 GCA_000173715.1.22 GCA_000167995.1.22 GCA_000475115.2.22 GCA_000475155.2.22 GCA_000475095.2.22 GCA_000222975.1.22 GCA_000018805.1.22 GCA_000013825.1.22 +ENSEMBL_BFMPP_22_125.bundle : GCA_000169675.1.22 GCA_000169695.1.22 GCA_000169615.1.22 GCA_000169655.1.22 GCA_000186725.1.22 GCA_000007885.1.22 GCA_000170275.1.22 GCA_000182505.1.22 GCA_000168235.2.22 GCA_000169635.1.22 GCA_000182525.1.22 GCA_000181455.2.22 GCA_000022805.1.22 GCA_000022825.1.22 GCA_000311885.1.22 GCA_000006645.1.22 GCA_000182705.1.22 GCA_000013805.1.22 GCA_000182485.1.22 GCA_000182545.1.22 GCA_000016445.1.22 GCA_000268545.1.22 GCA_000268325.1.22 GCA_000268565.1.22 GCA_000268585.1.22 GCA_000268345.1.22 GCA_000268365.1.22 GCA_000268385.1.22 GCA_000268405.1.22 GCA_000268425.1.22 GCA_000269205.1.22 GCA_000269465.1.22 GCA_000269225.1.22 GCA_000269485.1.22 GCA_000268445.1.22 GCA_000269245.1.22 GCA_000268605.1.22 GCA_000268625.1.22 GCA_000268465.1.22 GCA_000268485.1.22 GCA_000268645.1.22 GCA_000268505.1.22 GCA_000268525.1.22 GCA_000268665.1.22 GCA_000268685.1.22 GCA_000268705.1.22 GCA_000268725.1.22 GCA_000269265.1.22 GCA_000269285.1.22 GCA_000268745.1.22 GCA_000269305.1.22 GCA_000269325.1.22 GCA_000268765.1.22 GCA_000269345.1.22 GCA_000268785.1.22 GCA_000268805.1.22 GCA_000268825.1.22 GCA_000268845.1.22 GCA_000268865.1.22 GCA_000268885.1.22 GCA_000268905.1.22 GCA_000269365.1.22 GCA_000268925.1.22 GCA_000268945.1.22 GCA_000268965.1.22 GCA_000269385.1.22 GCA_000268985.1.22 GCA_000269005.1.22 GCA_000269025.1.22 GCA_000269405.1.22 GCA_000269045.1.22 GCA_000269065.1.22 GCA_000269085.1.22 GCA_000269105.1.22 GCA_000269125.1.22 GCA_000269425.1.22 +ENSEMBL_BFMPP_22_126.bundle : GCA_000269445.1.22 GCA_000269145.1.22 GCA_000269165.1.22 GCA_000269185.1.22 GCA_000475135.2.22 GCA_000022845.1.22 GCA_000016945.1.22 GCA_000047365.1.22 GCA_000511675.1.22 GCA_000020085.1.22 GCA_000019465.1.22 GCA_000173775.1.22 GCA_000173755.1.22 GCA_000239335.1.22 GCA_000495435.2.22 GCA_000511935.1.22 GCA_000023465.1.22 GCA_000175255.2.22 GCA_000277755.1.22 GCA_000024245.1.22 GCA_000498655.1.22 GCA_000007105.1.22 GCA_000218875.1.22 MG2.22 +NCBI_bacterial_1.bundle : Acaryochloris_marina_MBIC11017_uid58167 Acetobacterium_woodii_DSM_1030_uid88073 Acetobacter_pasteurianus_386B_uid214433 Acetobacter_pasteurianus_IFO_3283_01_42C_uid158377 Acetobacter_pasteurianus_IFO_3283_01_uid59279 Acetobacter_pasteurianus_IFO_3283_03_uid158373 Acetobacter_pasteurianus_IFO_3283_07_uid158381 Acetobacter_pasteurianus_IFO_3283_12_uid158379 Acetobacter_pasteurianus_IFO_3283_22_uid158383 Acetobacter_pasteurianus_IFO_3283_26_uid158531 Acetobacter_pasteurianus_IFO_3283_32_uid158375 Acetohalobium_arabaticum_DSM_5501_uid51423 Acholeplasma_brassicae_uid222823 Acholeplasma_laidlawii_PG_8A_uid58901 Acholeplasma_palmae_J233_uid222824 Achromobacter_xylosoxidans_A8_uid59899 Achromobacter_xylosoxidans_NBRC_15126_uid232243 Achromobacter_xylosoxidans_uid205255 Acidaminococcus_fermentans_DSM_20731_uid43471 Acidaminococcus_intestini_RyC_MR95_uid74445 Acidianus_hospitalis_W1_uid66875 Acidilobus_saccharovorans_345_15_uid51395 Acidimicrobidae_bacterium_YM16_304_uid193703 Acidimicrobium_ferrooxidans_DSM_10331_uid59215 Acidiphilium_cryptum_JF_5_uid58447 Acidiphilium_multivorum_AIU301_uid63345 Acidithiobacillus_caldus_SM_1_uid70791 Acidithiobacillus_ferrivorans_SS3_uid67387 Acidithiobacillus_ferrooxidans_ATCC_23270_uid57649 Acidithiobacillus_ferrooxidans_ATCC_53993_uid58613 Acidobacterium_capsulatum_ATCC_51196_uid59127 Acidobacterium_MP5ACTX9_uid50551 Acidothermus_cellulolyticus_11B_uid58501 Acidovorax_avenae_ATCC_19860_uid42497 Acidovorax_citrulli_AAC00_1_uid58429 Acidovorax_ebreus_TPSY_uid59233 Acidovorax_JS42_uid58427 Acidovorax_KKS102_uid176500 Aciduliprofundum_boonei_T469_uid43333 Aciduliprofundum_MAR08_339_uid184407 Acinetobacter_ADP1_uid61597 Acinetobacter_baumannii_1656_2_uid158677 Acinetobacter_baumannii_AB0057_uid59083 Acinetobacter_baumannii_AB307_0294_uid59271 Acinetobacter_baumannii_ACICU_uid58765 Acinetobacter_baumannii_ATCC_17978_uid58731 Acinetobacter_baumannii_AYE_uid61637 Acinetobacter_baumannii_BJAB07104_uid210971 Acinetobacter_baumannii_BJAB0715_uid210972 Acinetobacter_baumannii_BJAB0868_uid210973 Acinetobacter_baumannii_D1279779_uid190222 Acinetobacter_baumannii_MDR_TJ_uid162739 Acinetobacter_baumannii_MDR_ZJ06_uid158685 Acinetobacter_baumannii_SDF_uid61601 Acinetobacter_baumannii_TCDC_AB0715_uid158679 Acinetobacter_baumannii_TYTH_1_uid176498 Acinetobacter_baumannii_ZW85_1_uid231518 Acinetobacter_calcoaceticus_PHEA_2_uid83123 Acinetobacter_oleivorans_DR1_uid50119 Actinobacillus_pleuropneumoniae_serovar_3_JL03_uid58891 Actinobacillus_pleuropneumoniae_serovar_5b_L20_uid58789 Actinobacillus_pleuropneumoniae_serovar_7_AP76_uid59231 Actinobacillus_succinogenes_130Z_uid58247 Actinobacillus_suis_H91_0380_uid176363 Actinoplanes_friuliensis_DSM_7358_uid226110 Actinoplanes_missouriensis_431_uid158169 Actinoplanes_N902_109_uid202219 Actinoplanes_SE50_110_uid162333 Actinosynnema_mirum_DSM_43827_uid58951 Adlercreutzia_equolifaciens_DSM_19450_uid223286 Advenella_kashmirensis_WT001_uid80859 Aequorivita_sublithincola_DSM_14238_uid168181 Anabaena_90_uid179383 Aerococcus_urinae_ACS_120_V_Col10a_uid64757 Aeromonas_hydrophila_ATCC_7966_uid58617 Aeromonas_hydrophila_ML09_119_uid205540 Aeromonas_salmonicida_A449_uid58631 Aeromonas_veronii_B565_uid66323 Aeropyrum_camini_SY1___JCM_12091_uid222311 Aeropyrum_pernix_K1_uid57757 Aggregatibacter_actinomycetemcomitans_ANH9381_uid80743 Aggregatibacter_actinomycetemcomitans_D11S_1_uid41333 Aggregatibacter_actinomycetemcomitans_D7S_1_uid46989 Aggregatibacter_aphrophilus_NJ8700_uid59407 Agrobacterium_fabrum_C58_uid57865 Agrobacterium_H13_3_uid63403 +NCBI_bacterial_2.bundle : Agrobacterium_radiobacter_K84_uid58269 Agrobacterium_vitis_S4_uid58249 Agromonas_oligotrophica_S58_uid192186 Akkermansia_muciniphila_ATCC_BAA_835_uid58985 Alcanivorax_borkumensis_SK2_uid58169 Alcanivorax_dieselolei_B5_uid176364 Alicycliphilus_denitrificans_BC_uid49953 Alicycliphilus_denitrificans_K601_uid66307 Alicyclobacillus_acidocaldarius_DSM_446_uid59199 Alicyclobacillus_acidocaldarius_Tc_4_1_uid158681 Aliivibrio_salmonicida_LFI1238_uid59251 Alistipes_finegoldii_DSM_17242_uid168180 Alistipes_shahii_WAL_8301_uid197175 Alkalilimnicola_ehrlichii_MLHE_1_uid58467 Alkaliphilus_metalliredigens_QYMF_uid58171 Alkaliphilus_oremlandii_OhILAs_uid58495 Allochromatium_vinosum_DSM_180_uid46083 alpha_proteobacterium_HIMB59_uid175778 alpha_proteobacterium_HIMB5_uid175779 Alteromonas_macleodii__Aegean_Sea_MED64__uid231689 Alteromonas_macleodii_AltDE1_uid179068 Alteromonas_macleodii_ATCC_27126_uid55253 Alteromonas_macleodii__Balearic_Sea_AD45__uid176366 Alteromonas_macleodii__Black_Sea_11__uid176365 Alteromonas_macleodii__Deep_ecotype__uid58251 Alteromonas_macleodii__English_Channel_615__uid210781 Alteromonas_macleodii__English_Channel_673__uid176367 Alteromonas_macleodii__Ionian_Sea_U4__uid210780 Alteromonas_macleodii__Ionian_Sea_U7__uid210785 Alteromonas_macleodii__Ionian_Sea_U8__uid210782 Alteromonas_macleodii__Ionian_Sea_UM4b__uid210784 Alteromonas_macleodii__Ionian_Sea_UM7__uid210783 Alteromonas_SN2_uid67349 Aminobacterium_colombiense_DSM_12261_uid47083 Ammonifex_degensii_KC4_uid41053 Amphibacillus_xylanus_NBRC_15112_uid176453 Amycolatopsis_mediterranei_RB_uid216089 Amycolatopsis_mediterranei_S699_uid158689 Amycolatopsis_mediterranei_S699_uid171830 Amycolatopsis_mediterranei_U32_uid50565 Amycolatopsis_orientalis_HCCB10007_uid203791 Amycolicicoccus_subflavus_DQS3_9A1_uid67253 Anabaena_cylindrica_PCC_7122_uid183339 Anabaena_variabilis_ATCC_29413_uid58043 Anaerobaculum_mobile_DSM_13181_uid168323 Anaerococcus_prevotii_DSM_20548_uid59219 Anaerolinea_thermophila_UNI_1_uid62245 Anaeromyxobacter_dehalogenans_2CP_1_uid58989 Anaeromyxobacter_dehalogenans_2CP_C_uid58135 Anaeromyxobacter_Fw109_5_uid58755 Anaeromyxobacter_K_uid58953 Anaplasma_centrale_Israel_uid42155 Anaplasma_marginale_Dawn_uid226994 Anaplasma_marginale_Florida_uid58577 Anaplasma_marginale_Gypsy_Plains_uid227217 Anaplasma_marginale_Maries_uid57629 Anaplasma_phagocytophilum_Dog2_uid213225 Anaplasma_phagocytophilum_HZ2_uid213224 Anaplasma_phagocytophilum_HZ_uid57951 Anaplasma_phagocytophilum_JM_uid213223 Anoxybacillus_flavithermus_WK1_uid59135 Aquifex_aeolicus_VF5_uid57765 Arcanobacterium_haemolyticum_DSM_20595_uid49489 Archaeoglobus_fulgidus_DSM_4304_uid57717 Archaeoglobus_profundus_DSM_5631_uid43493 Archaeoglobus_sulfaticallidus_PM70_1_uid201033 Archaeoglobus_veneficus_SNP6_uid65269 archaeon_Mx1201_uid196597 Arcobacter_butzleri_7h1h_uid200766 Arcobacter_butzleri_ED_1_uid158699 Arcobacter_butzleri_RM4018_uid58557 Arcobacter_L_uid158135 Arcobacter_nitrofigilis_DSM_7299_uid49001 Aromatoleum_aromaticum_EbN1_uid58231 Arthrobacter_arilaitensis_Re117_uid53509 Arthrobacter_aurescens_TC1_uid58109 Arthrobacter_chlorophenolicus_A6_uid58969 Arthrobacter_FB24_uid58141 Arthrobacter_nitroguajacolicus_Rue61a_uid174511 Arthrobacter_phenanthrenivorans_Sphe3_uid63629 Arthrospira_platensis_NIES_39_uid197171 Aster_yellows_witches_broom_phytoplasma_AYWB_uid58297 Asticcacaulis_excentricus_CB_48_uid55641 Atopobium_parvulum_DSM_20469_uid59195 Azoarcus_BH72_uid61603 Azoarcus_KH32C_uid193704 +NCBI_bacterial_3.bundle : Azorhizobium_caulinodans_ORS_571_uid58905 Azospirillum_B510_uid46085 Azospirillum_brasilense_Sp245_uid162161 Azospirillum_lipoferum_4B_uid82343 Azotobacter_vinelandii_CA6_uid198830 Azotobacter_vinelandii_CA_uid198829 Azotobacter_vinelandii_DJ_uid57597 Bacillus_1NLA3E_uid81841 Bacillus_amyloliquefaciens_CC178_uid226115 Bacillus_amyloliquefaciens_DSM_7_uid53535 Bacillus_amyloliquefaciens_FZB42_uid58271 Bacillus_amyloliquefaciens_IT_45_uid181617 Bacillus_amyloliquefaciens_LFB112_uid232246 Bacillus_amyloliquefaciens_LL3_uid158133 Bacillus_amyloliquefaciens_plantarum_AS43_3_uid183682 Bacillus_amyloliquefaciens_plantarum_CAU_B946_uid84215 Bacillus_amyloliquefaciens_plantarum_NAU_B3_uid222816 Bacillus_amyloliquefaciens_plantarum_UCMB5033_uid215237 Bacillus_amyloliquefaciens_plantarum_UCMB5036_uid190705 Bacillus_amyloliquefaciens_plantarum_UCMB5113_uid215236 Bacillus_amyloliquefaciens_plantarum_YAU_B9601_Y2_uid159001 Bacillus_amyloliquefaciens_TA208_uid158701 Bacillus_amyloliquefaciens_XH7_uid158881 Bacillus_amyloliquefaciens_Y2_uid165195 Bacillus_anthracis_A0248_uid59385 Bacillus_anthracis_A2012_uid54101 Bacillus_anthracis__Ames_Ancestor__uid58083 Bacillus_anthracis_Ames_uid57909 Bacillus_anthracis_CDC_684_uid59303 Bacillus_anthracis_H9401_uid162021 Bacillus_anthracis_Sterne_uid58091 Bacillus_atrophaeus_1942_uid59887 Bacillus_cellulosilyticus_DSM_2522_uid43329 Bacillus_cereus_03BB102_uid59299 Bacillus_cereus_AH187_uid58753 Bacillus_cereus_AH820_uid58751 Bacillus_cereus_ATCC_10987_uid57673 Bacillus_cereus_ATCC_14579_uid57975 Bacillus_cereus_B4264_uid58757 Bacillus_cereus_biovar_anthracis_CI_uid50615 Bacillus_cereus_E33L_uid58103 Bacillus_cereus_F837_76_uid83611 Bacillus_cereus_FRI_35_uid173403 Bacillus_cereus_G9842_uid58759 Bacillus_cereus_NC7401_uid82815 Bacillus_cereus_Q1_uid58529 Bacillus_clausii_KSM_K16_uid58237 Bacillus_coagulans_2_6_uid68053 Bacillus_coagulans_36D1_uid54335 Bacillus_cytotoxicus_NVH_391_98_uid58317 Bacillus_halodurans_C_125_uid57791 Bacillus_infantis_NRRL_B_14911_uid222804 Bacillus_JS_uid162189 Bacillus_licheniformis_9945A_uid207072 Bacillus_licheniformis_ATCC_14580_uid58097 Bacillus_licheniformis_DSM_13___ATCC_14580_uid58199 Bacillus_megaterium_DSM319_uid48371 Bacillus_megaterium_QM_B1551_uid15862 Bacillus_megaterium_WSH_002_uid159841 Bacillus_pseudofirmus_OF4_uid45847 Bacillus_pumilus_SAFR_032_uid59017 Bacillus_selenitireducens_MLS10_uid49513 Bacillus_subtilis_168_uid57675 Bacillus_subtilis_6051_HGW_uid193706 Bacillus_subtilis_BAB_1_uid195461 Bacillus_subtilis_BSn5_uid62463 Bacillus_subtilis_BSP1_uid184010 Bacillus_subtilis_natto_BEST195_uid183001 Bacillus_subtilis_PY79_uid229877 Bacillus_subtilis_QB928_uid173926 Bacillus_subtilis_RO_NN_1_uid158879 Bacillus_subtilis_spizizenii_TU_B_10_uid73967 Bacillus_subtilis_spizizenii_W23_uid51879 Bacillus_subtilis_XF_1_uid189187 Bacillus_thuringiensis_Al_Hakam_uid58795 +NCBI_bacterial_4.bundle : Bacillus_thuringiensis_BMB171_uid49135 Bacillus_thuringiensis_Bt407_uid177931 Bacillus_thuringiensis_HD_771_uid173374 Bacillus_thuringiensis_HD_789_uid173860 Bacillus_thuringiensis_MC28_uid176369 Bacillus_thuringiensis_serovar_chinensis_CT_43_uid158151 Bacillus_thuringiensis_serovar_finitimus_YBT_020_uid158875 Bacillus_thuringiensis_serovar_IS5056_uid190186 Bacillus_thuringiensis_serovar_konkukian_97_27_uid58089 Bacillus_thuringiensis_serovar_kurstaki_HD73_uid189188 Bacillus_thuringiensis_YBT_1518_uid229419 Bacillus_toyonensis_BCT_7112_uid227218 Bacillus_weihenstephanensis_KBAB4_uid58315 Bacteriovorax_marinus_SJ_uid82341 bacterium_BT_1_uid184079 Bacteroides_CF50_uid222805 Bacteroides_fragilis_638R_uid84217 Bacteroides_fragilis_NCTC_9343_uid57639 Bacteroides_fragilis_YCH46_uid58195 Bacteroides_helcogenes_P_36_108_uid62135 Bacteroides_salanitronis_DSM_18170_uid63269 Bacteroides_thetaiotaomicron_VPI_5482_uid62913 Bacteroides_uniformis_uid13130 Bacteroides_vulgatus_ATCC_8482_uid58253 Bacteroides_xylanisolvens_XB1A_uid197168 Bartonella_australis_Aust_NH1_uid189950 Bartonella_bacilliformis_KC583_uid58533 Bartonella_clarridgeiae_73_uid62131 Bartonella_grahamii_as4aup_uid59405 Bartonella_henselae_Houston_1_uid57745 Bartonella_quintana_RM_11_uid174512 Bartonella_quintana_Toulouse_uid57635 Bartonella_tribocorum_CIP_105476_uid59129 Bartonella_vinsonii_berkhoffii_Winnie_uid189951 Baumannia_cicadellinicola_Hc__Homalodisca_coagulata__uid58111 Bdellovibrio_bacteriovorus_HD100_uid61595 Bdellovibrio_bacteriovorus_Tiberius_uid182482 Bdellovibrio_exovorus_JSS_uid194119 Beijerinckia_indica_ATCC_9039_uid59057 Belliella_baltica_DSM_15883_uid168182 beta_proteobacterium_CB_uid191340 Beutenbergia_cavernae_DSM_12333_uid59047 Bibersteinia_trehalosi_192_uid193709 Bifidobacterium_adolescentis_ATCC_15703_uid58559 Bifidobacterium_animalis_ATCC_25527_uid162513 Bifidobacterium_animalis_lactis_AD011_uid58911 Bifidobacterium_animalis_lactis_ATCC_27673_uid222803 Bifidobacterium_animalis_lactis_B420_uid163691 Bifidobacterium_animalis_lactis_BB_12_uid158871 Bifidobacterium_animalis_lactis_Bi_07_uid163693 Bifidobacterium_animalis_lactis_Bl_04_uid59359 Bifidobacterium_animalis_lactis_Bl12_uid210081 Bifidobacterium_animalis_lactis_BLC1_uid158867 Bifidobacterium_animalis_lactis_CNCM_I_2494_uid158869 Bifidobacterium_animalis_lactis_DSM_10140_uid59357 Bifidobacterium_animalis_lactis_V9_uid158865 Bifidobacterium_asteroides_PRL2011_uid176921 Bifidobacterium_bifidum_BGN4_uid167988 Bifidobacterium_bifidum_PRL2010_uid59883 Bifidobacterium_bifidum_S17_uid59545 Bifidobacterium_breve_ACS_071_V_Sch8b_uid158863 Bifidobacterium_breve_UCC2003_uid193702 Bifidobacterium_dentium_Bd1_uid43091 Bifidobacterium_longum_BBMN68_uid60163 Bifidobacterium_longum_DJO10A_uid58833 Bifidobacterium_longum_F8_uid197184 Bifidobacterium_longum_infantis_157F_uid62693 Bifidobacterium_longum_infantis_ATCC_15697_uid159865 Bifidobacterium_longum_infantis_ATCC_15697_uid58677 Bifidobacterium_longum_JCM_1217_uid62695 Bifidobacterium_longum_JDM301_uid49131 Bifidobacterium_longum_KACC_91563_uid158861 Bifidobacterium_longum_NCC2705_uid57939 Bifidobacterium_thermophilum_RBL67_uid193770 Blastococcus_saxobsidens_DD2_uid89391 Blattabacterium__Blaberus_giganteus__uid165873 Blattabacterium__Blatta_orientalis__Tarazona_uid188115 Blattabacterium__Blattella_germanica__Bge_uid41533 Blattabacterium__Cryptocercus_punctulatus__Cpu_uid81083 Blattabacterium__Mastotermes_darwiniensis__MADAR_uid77127 Blattabacterium__Nauphoeta_cinerea__uid222815 Blattabacterium__Panesthia_angustipennis_spadica__BPAA_uid193717 Blattabacterium__Periplaneta_americana__BPLAN_uid41287 Bordetella_avium_197N_uid61563 Bordetella_bronchiseptica_253_uid178913 Bordetella_bronchiseptica_MO149_uid177517 Bordetella_bronchiseptica_RB50_uid57613 Bordetella_parapertussis_12822_uid57615 Bordetella_parapertussis_18323_uid175569 Bordetella_parapertussis_Bpp5_uid177516 Bordetella_pertussis_CS_uid158859 Bordetella_pertussis_Tohama_I_uid57617 Bordetella_petrii_uid61631 Borrelia_afzelii_HLJ01_uid177930 Borrelia_afzelii_PKo_uid159867 Borrelia_afzelii_PKo_uid58653 Borrelia_bissettii_DN127_uid71231 Borrelia_burgdorferi_B31_uid57581 Borrelia_burgdorferi_CA382_uid214794 Borrelia_burgdorferi_JD1_uid161197 Borrelia_burgdorferi_N40_uid161241 Borrelia_burgdorferi_ZS7_uid59429 Borrelia_crocidurae_Achema_uid162335 Borrelia_duttonii_Ly_uid58791 Borrelia_garinii_BgVir_uid162165 Borrelia_garinii_NMJW1_uid177081 Borrelia_garinii_PBi_uid58125 Borrelia_hermsii_DAH_uid59225 Borrelia_miyamotoi_LB_2001_uid215233 Borrelia_recurrentis_A1_uid58793 +NCBI_bacterial_5.bundle : Borrelia_turicatae_91E135_uid58311 Borrelia_valaisiana_VS116_uid54823 Brachybacterium_faecium_DSM_4810_uid58649 Brachyspira_hyodysenteriae_WA1_uid59291 Brachyspira_intermedia_PWS_A_uid158369 Brachyspira_murdochii_DSM_12563_uid48819 Brachyspira_pilosicoli_95_1000_uid50609 Brachyspira_pilosicoli_B2904_uid175255 Brachyspira_pilosicoli_P43_6_78_uid184077 Brachyspira_pilosicoli_WesB_uid175256 Bradyrhizobium_BTAi1_uid58505 Bradyrhizobium_japonicum_USDA_110_uid57599 Bradyrhizobium_japonicum_USDA_6_uid158851 Bradyrhizobium_ORS_278_uid58941 Bradyrhizobium_S23321_uid158167 Brevibacillus_brevis_NBRC_100599_uid59175 Brevundimonas_subvibrioides_ATCC_15264_uid42117 Brucella_abortus_A13334_uid83615 Brucella_abortus_bv__1_9_941_uid58019 Brucella_abortus_S19_uid58873 Brucella_canis_ATCC_23365_uid59009 Brucella_canis_HSK_A52141_uid83613 Brucella_ceti_TE10759_12_uid229880 Brucella_ceti_TE28753_12_uid229879 Brucella_melitensis_ATCC_23457_uid59241 Brucella_melitensis_biovar_Abortus_2308_uid62937 Brucella_melitensis_bv__1_16M_uid57735 Brucella_melitensis_M28_uid158857 Brucella_melitensis_M5_90_uid158855 Brucella_melitensis_NI_uid158853 Brucella_microti_CCM_4915_uid59319 Brucella_ovis_ATCC_25840_uid58113 Brucella_pinnipedialis_B2_94_uid71131 Brucella_suis_1330_uid159871 Brucella_suis_1330_uid57927 Brucella_suis_ATCC_23445_uid59015 Brucella_suis_VBI22_uid83617 Buchnera_aphidicola_5A__Acyrthosiphon_pisum__uid59285 Buchnera_aphidicola_Ak__Acyrthosiphon_kondoi__uid158533 Buchnera_aphidicola_APS__Acyrthosiphon_pisum__uid57805 Buchnera_aphidicola_Bp__Baizongia_pistaciae__uid57827 Buchnera_aphidicola_Cc__Cinara_cedri__uid58579 Buchnera_aphidicola__Cinara_tujafilina__uid68101 Buchnera_aphidicola_JF98__Acyrthosiphon_pisum__uid158845 Buchnera_aphidicola_JF99__Acyrthosiphon_pisum__uid158847 Buchnera_aphidicola_LL01__Acyrthosiphon_pisum__uid158843 Buchnera_aphidicola_Sg__Schizaphis_graminum__uid57913 Buchnera_aphidicola_TLW03__Acyrthosiphon_pisum__uid158849 Buchnera_aphidicola_Tuc7__Acyrthosiphon_pisum__uid59283 Buchnera_aphidicola_Ua__Uroleucon_ambrosiae__uid158535 Burkholderia_383_uid58073 Burkholderia_ambifaria_AMMD_uid58303 Burkholderia_ambifaria_MC40_6_uid58701 Burkholderia_CCGE1001_uid42975 Burkholderia_CCGE1002_uid42523 Burkholderia_CCGE1003_uid46253 Burkholderia_cenocepacia_AU_1054_uid58371 Burkholderia_cenocepacia_HI2424_uid58369 Burkholderia_cenocepacia_J2315_uid57953 Burkholderia_cenocepacia_MC0_3_uid58769 Burkholderia_cepacia_GG4_uid173858 Burkholderia_gladioli_BSR3_uid66301 Burkholderia_glumae_BGR1_uid59397 Burkholderia_KJ006_uid165871 Burkholderia_mallei_ATCC_23344_uid57725 Burkholderia_mallei_NCTC_10229_uid58383 Burkholderia_mallei_NCTC_10247_uid58385 Burkholderia_mallei_SAVP1_uid58387 Burkholderia_multivorans_ATCC_17616_uid58697 Burkholderia_multivorans_ATCC_17616_uid58909 Burkholderia_phenoliruptrix_BR3459a_uid176370 Burkholderia_phymatum_STM815_uid58699 Burkholderia_phytofirmans_PsJN_uid58729 Burkholderia_pseudomallei_1026b_uid162511 Burkholderia_pseudomallei_1106a_uid58515 Burkholderia_pseudomallei_1710b_uid58391 Burkholderia_pseudomallei_668_uid58389 +NCBI_bacterial_6.bundle : Burkholderia_pseudomallei_BPC006_uid174460 Burkholderia_pseudomallei_K96243_uid57733 Burkholderia_pseudomallei_MSHR305_uid213227 Burkholderia_pseudomallei_MSHR346_uid55259 Burkholderia_pseudomallei_NCTC_13179_uid226109 Burkholderia_rhizoxinica_HKI_454_uid60487 Burkholderia_RPE64_uid205541 Burkholderia_thailandensis_E264_uid58081 Burkholderia_thailandensis_MSMB121_uid201037 Burkholderia_vietnamiensis_G4_uid58075 Burkholderia_xenovorans_LB400_uid57823 Burkholderia_YI23_uid81081 butyrate_producing_bacterium_SM4_1_uid197180 butyrate_producing_bacterium_SS3_4_uid197159 butyrate_producing_bacterium_SSC_2_uid197181 Butyrivibrio_fibrisolvens_uid197155 Butyrivibrio_proteoclasticus_B316_uid51489 Caldicellulosiruptor_bescii_DSM_6725_uid59201 Caldicellulosiruptor_hydrothermalis_108_uid60157 Caldicellulosiruptor_kristjanssonii_177R1B_uid60393 Caldicellulosiruptor_kronotskyensis_2002_uid60491 Caldicellulosiruptor_lactoaceticus_6A_uid60575 Caldicellulosiruptor_obsidiansis_OB47_uid51501 Caldicellulosiruptor_owensensis_OL_uid60165 Caldicellulosiruptor_saccharolyticus_DSM_8903_uid58289 Caldilinea_aerophila_DSM_14535___NBRC_104270_uid158165 Caldisericum_exile_AZM16c01_uid158173 Caldisphaera_lagunensis_DSM_15908_uid183486 Calditerrivibrio_nitroreducens_DSM_19672_uid60821 Caldivirga_maquilingensis_IC_167_uid58711 Calothrix_PCC_6303_uid183109 Calothrix_PCC_7507_uid182930 Campylobacter_03_427_uid226993 Campylobacter_coli_15_537360_uid226113 Campylobacter_coli_76339_uid217050 Campylobacter_coli_CVM_N29710_uid219322 Campylobacter_concisus_13826_uid58667 Campylobacter_curvus_525_92_uid58669 Campylobacter_fetus_82_40_uid58545 Campylobacter_hominis_ATCC_BAA_381_uid58981 Campylobacter_jejuni_00_2425_uid219359 Campylobacter_jejuni_00_2426_uid219324 Campylobacter_jejuni_00_2538_uid219325 Campylobacter_jejuni_00_2544_uid219326 Campylobacter_jejuni_4031_uid222817 Campylobacter_jejuni_81116_uid58771 Campylobacter_jejuni_81_176_uid58503 Campylobacter_jejuni_doylei_269_97_uid58671 Campylobacter_jejuni_IA3902_uid159531 Campylobacter_jejuni_ICDCCJ07001_uid61249 Campylobacter_jejuni_M1_uid159535 Campylobacter_jejuni_NCTC_11168___ATCC_700819_uid57587 Campylobacter_jejuni_NCTC_11168_BN148_uid174152 Campylobacter_jejuni_PT14_uid176499 Campylobacter_jejuni_RM1221_uid57899 Campylobacter_jejuni_S3_uid159533 Campylobacter_lari_RM2100_uid58115 candidate_division_SR1_bacterium_RAAC1_SR1_1_uid230714 candidate_division_WWE3_bacterium_RAAC2_WWE3_1_uid230713 Candidatus_Accumulibacter_phosphatis_clade_IIA_UW_1_uid59207 Candidatus_Amoebophilus_asiaticus_5a2_uid58963 Candidatus_Arthromitus_SFB_mouse_Japan_uid71379 Candidatus_Arthromitus_SFB_mouse_Yit_uid159517 Candidatus_Arthromitus_SFB_rat_Yit_uid73425 Candidatus_Azobacteroides_pseudotrichonymphae_genomovar__CFP2_uid59163 Candidatus_Blochmannia_chromaiodes_640_uid185308 Candidatus_Blochmannia_floridanus_uid57999 Candidatus_Blochmannia_pennsylvanicus_BPEN_uid58329 Candidatus_Blochmannia_vafer_BVAF_uid62083 Candidatus_Caldiarchaeum_subterraneum_uid227223 Candidatus_Carsonella_ruddii_CE_isolate_Thao2000_uid172732 Candidatus_Carsonella_ruddii_CS_isolate_Thao2000_uid172733 Candidatus_Carsonella_ruddii_DC_uid213383 Candidatus_Carsonella_ruddii_HC_isolate_Thao2000_uid172734 Candidatus_Carsonella_ruddii_HT_isolate_Thao2000_uid172735 Candidatus_Carsonella_ruddii_PC_isolate_NHV_uid172736 Candidatus_Carsonella_ruddii_uid58773 Candidatus_Chloracidobacterium_thermophilum_B_uid73587 Candidatus_Cloacamonas_acidaminovorans_Evry_uid62959 Candidatus_Desulforudis_audaxviator_MP104C_uid59067 Candidatus_Hamiltonella_defensa_5AT__Acyrthosiphon_pisum__uid59289 Candidatus_Hodgkinia_cicadicola_Dsem_uid59311 Candidatus_Kinetoplastibacterium_blastocrithidii__ex_Strigomonas_culicis__uid183629 Carnobacterium_17_4_uid65789 Candidatus_Kinetoplastibacterium_blastocrithidii_TCC012E_uid189752 Candidatus_Kinetoplastibacterium_crithidii__ex_Angomonas_deanei_ATCC_30255__uid183630 Candidatus_Kinetoplastibacterium_crithidii_TCC036E_uid189749 Candidatus_Kinetoplastibacterium_desouzaii_TCC079E_uid189750 Candidatus_Kinetoplastibacterium_galatii_TCC219_uid189751 Candidatus_Kinetoplastibacterium_oncopeltii_TCC290E_uid189840 Candidatus_Korarchaeum_cryptofilum_OPF8_uid58601 Candidatus_Koribacter_versatilis_Ellin345_uid58479 Candidatus_Liberibacter_americanus_Sao_Paulo_uid227424 Candidatus_Liberibacter_asiaticus_gxpsy_uid193764 Candidatus_Liberibacter_asiaticus_psy62_uid59227 Candidatus_Liberibacter_solanacearum_CLso_ZC1_uid61245 Candidatus_Methylomirabilis_oxyfera_uid161981 Candidatus_Midichloria_mitochondrii_IricVA_uid68687 Candidatus_Moranella_endobia_PCIT_uid68739 Candidatus_Moranella_endobia_PCVAL_uid197215 Candidatus_Mycoplasma_haemolamae_Purdue_uid171259 Candidatus_Mycoplasma_haemominutum__Birmingham_1__uid197195 Candidatus_Nasuia_deltocephalinicola_NAS_ALF_uid214084 Candidatus_Nitrosopumilus_AR2_uid176130 Candidatus_Nitrosopumilus_koreensis_AR1_uid176129 Candidatus_Nitrososphaera_gargensis_Ga9_2_uid176707 Candidatus_Nitrospira_defluvii_uid51175 Candidatus_Pelagibacter_IMCC9063_uid66305 Candidatus_Pelagibacter_ubique_HTCC1062_uid58401 Candidatus_Phytoplasma_australiense_uid61641 Candidatus_Phytoplasma_mali_uid59087 Candidatus_Phytoplasma_solani_284_09_uid225030 Candidatus_Portiera_aleyrodidarum_BT_B_uid173859 Candidatus_Portiera_aleyrodidarum_BT_B_uid176373 Candidatus_Portiera_aleyrodidarum_BT_QVLC_uid175570 Candidatus_Portiera_aleyrodidarum_BT_QVLC_uid176374 Candidatus_Portiera_aleyrodidarum_TV_uid195460 Candidatus_Protochlamydia_amoebophila_UWE25_uid58079 Candidatus_Puniceispirillum_marinum_IMCC1322_uid47081 Candidatus_Rickettsia_amblyommii_GAT_30V_uid156845 Candidatus_Riesia_pediculicola_USDA_uid46841 Candidatus_Ruthia_magnifica_Cm__Calyptogena_magnifica__uid58645 +NCBI_bacterial_7.bundle : Candidatus_Saccharibacteria_bacterium_RAAC3_TM7_1_uid230715 Candidatus_Saccharobacterium_alaburgensis_uid203361 Candidatus_Solibacter_usitatus_Ellin6076_uid58139 Candidatus_Sulcia_muelleri_CARI_uid52535 Candidatus_Sulcia_muelleri_DMIN_uid47075 Candidatus_Sulcia_muelleri_GWSS_uid58943 Candidatus_Sulcia_muelleri_SMDSEM_uid59393 Candidatus_Sulcia_muelleri_Sulcia_ALF_uid214083 Candidatus_Tremblaya_phenacola_PAVE_uid209173 Candidatus_Tremblaya_princeps_PCIT_uid68741 Candidatus_Tremblaya_princeps_PCVAL_uid159519 Candidatus_Uzinura_diaspidicola_ASNER_uid186740 Candidatus_Vesicomyosocius_okutanii_HA_uid59427 Candidatus_Zinderia_insecticola_CARI_uid52459 Capnocytophaga_canimorsus_Cc5_uid70727 Capnocytophaga_ochracea_DSM_7271_uid59197 Carboxydothermus_hydrogenoformans_Z_2901_uid57821 Cardinium_endosymbiont_cEper1_of_Encarsia_pergandiella_uid175524 Carnobacterium_maltaromaticum_LMA28_uid179370 Carnobacterium_WN1359_uid225603 Catenulispora_acidiphila_DSM_44928_uid59077 Caulobacter_crescentus_CB15_uid57891 Caulobacter_crescentus_NA1000_uid59307 Caulobacter_K31_uid58551 Caulobacter_segnis_ATCC_21756_uid41709 Cellulomonas_fimi_ATCC_484_uid66779 Cellulomonas_flavigena_DSM_20109_uid48821 Chelativorans_BNC1_uid58069 Cellulophaga_algicola_DSM_14237_uid62159 Cellulophaga_lytica_DSM_7489_uid63401 _Cellvibrio__gilvus_ATCC_13127_uid68143 Cellvibrio_japonicus_Ueda107_uid59139 Cenarchaeum_symbiosum_A_uid61411 Chamaesiphon_PCC_6605_uid183005 Chitinophaga_pinensis_DSM_2588_uid59113 Chlamydia_muridarum_Nigg_uid57785 Chlamydia_pecorum_P787_uid221292 Chlamydia_pecorum_PV3056_3_uid221290 Chlamydia_pecorum_W73_uid221291 Chlamydia_psittaci_01DC12_uid179070 Chlamydia_psittaci_84_55_uid175571 Chlamydia_psittaci_GR9_uid175572 Chlamydia_psittaci_M56_uid175576 Chlamydia_psittaci_MN_uid175573 Chlamydia_psittaci_VS225_uid175574 Chlamydia_psittaci_WC_uid175577 Chlamydia_psittaci_WS_RT_E30_uid175575 Chlamydia_trachomatis_434_Bu_uid61633 Chlamydia_trachomatis_A2497_uid159863 Chlamydia_trachomatis_A2497_uid159993 Chlamydia_trachomatis_A_363_uid196769 Chlamydia_trachomatis_A_5291_uid196770 Chlamydia_trachomatis_A_7249_uid196771 Chlamydia_trachomatis_A_HAR_13_uid58333 Chlamydia_trachomatis_B_Jali20_OT_uid59351 Chlamydia_trachomatis_B_TZ1A828_OT_uid59349 Chlamydia_trachomatis_C_TW_3_uid232251 Chlamydia_trachomatis_D_EC_uid159881 Chlamydia_trachomatis_D_LC_uid159879 Chlamydia_trachomatis_D_SotonD1_uid196772 Chlamydia_trachomatis_D_SotonD5_uid196773 Chlamydia_trachomatis_D_SotonD6_uid196774 Chlamydia_trachomatis_D_UW_3_CX_uid57637 Chlamydia_trachomatis_E_11023_uid161369 Chlamydia_trachomatis_E_150_uid161403 Chlamydia_trachomatis_E_Bour_uid196775 Chlamydia_trachomatis_E_C599_uid222812 Chlamydia_trachomatis_E_SotonE8_uid196777 Chlamydia_trachomatis_E_SW3_uid167483 Chlamydia_trachomatis_F_SW4_uid167484 Chlamydia_trachomatis_F_SW5_uid167485 Chlamydia_trachomatis_F_SWFPminus_uid222813 Chlamydia_trachomatis_G_11074_uid161409 Chlamydia_trachomatis_G_11222_uid161361 Chlamydia_trachomatis_G_9301_uid161377 Chlamydia_trachomatis_G_9768_uid161353 Chlamydia_trachomatis_G_SotonG1_uid196779 Chlamydia_trachomatis_Ia_SotonIa1_uid196780 Chlamydia_trachomatis_IU824_uid193712 Chlamydia_trachomatis_IU888_uid193713 Chlamydia_trachomatis_J_6276tet1_uid213394 Chlamydia_trachomatis_K_SotonK1_uid196782 Chlamydia_trachomatis_L1_115_uid196784 Chlamydia_trachomatis_L1_224_uid196785 Chlamydia_trachomatis_L1_440_LN_uid196783 Chlamydia_trachomatis_L2_25667R_uid196786 Chlamydia_trachomatis_L2_434_Bu_f__uid198644 Chlamydia_trachomatis_L2_434_Bu_i__uid198643 Chlamydia_trachomatis_L2b_795_uid196791 Chlamydia_trachomatis_L2b_8200_07_uid196787 Chlamydia_trachomatis_L2b_Ams1_uid196792 Chlamydia_trachomatis_L2b_Ams2_uid196793 Chlamydia_trachomatis_L2b_Ams3_uid196794 Chlamydia_trachomatis_L2b_Ams4_uid196795 Chlamydia_trachomatis_L2b_Ams5_uid196796 Chlamydia_trachomatis_L2b_Canada1_uid196798 Chlamydia_trachomatis_L2b_Canada2_uid196799 Chlamydia_trachomatis_L2b_CV204_uid196790 Chlamydia_trachomatis_L2b_UCH_1_proctitis_uid61635 Chlamydia_trachomatis_L2b_UCH_2_uid196788 Chlamydia_trachomatis_L2c_uid68843 Chlamydia_trachomatis_L3_404_LN_uid196797 Chlamydia_trachomatis_RC_F_69_uid213385 Chlamydia_trachomatis_RC_F_s_342_uid213391 Clostridium_BNL1100_uid84307 Chlamydia_trachomatis_RC_F_s_852_uid213387 Chlamydia_trachomatis_RC_J_943_uid213388 Chlamydia_trachomatis_RC_J_953_uid213389 Chlamydia_trachomatis_RC_J_966_uid213393 Chlamydia_trachomatis_RC_J_971_uid213395 Chlamydia_trachomatis_RC_J_s_122_uid213392 Chlamydia_trachomatis_RC_L2_55_uid213396 Chlamydia_trachomatis_RC_L2_s_3_uid213390 Chlamydia_trachomatis_RC_L2_s_46_uid213386 Chlamydia_trachomatis_Sweden2_uid161995 Chlamydia_trachomatis_uid196776 Chlamydia_trachomatis_uid196778 Chlamydia_trachomatis_uid196781 Chlamydia_trachomatis_uid196789 Chlamydia_trachomatis_uid196800 Chlamydia_trachomatis_uid216090 +NCBI_bacterial_8.bundle : Chlamydophila_abortus_S26_3_uid57963 Chlamydophila_caviae_GPIC_uid57783 Chlamydophila_felis_Fe_C_56_uid57971 Chlamydophila_pecorum_E58_uid66295 Chlamydophila_pneumoniae_AR39_uid57809 Chlamydophila_pneumoniae_CWL029_uid57811 Chlamydophila_pneumoniae_J138_uid57829 Chlamydophila_pneumoniae_LPCoLN_uid159529 Chlamydophila_pneumoniae_TW_183_uid57997 Chlamydophila_psittaci_01DC11_uid159527 Chlamydophila_psittaci_02DC15_uid159521 Chlamydophila_psittaci_08DC60_uid159525 Chlamydophila_psittaci_6BC_uid159845 Chlamydophila_psittaci_6BC_uid63621 Chlamydophila_psittaci_C19_98_uid159523 Chlamydophila_psittaci_CP3_uid175578 Chlamydophila_psittaci_Mat116_uid189026 Chlamydophila_psittaci_NJ1_uid175579 Chlamydophila_psittaci_RD1_uid162063 Chlorobaculum_parvum_NCIB_8327_uid59185 Chlorobium_chlorochromatii_CaD3_uid58375 Chlorobium_limicola_DSM_245_uid58127 Chlorobium_luteolum_DSM_273_uid58175 Chlorobium_phaeobacteroides_BS1_uid58131 Chlorobium_phaeobacteroides_DSM_266_uid58133 Chlorobium_phaeovibrioides_DSM_265_uid58129 Chlorobium_tepidum_TLS_uid57897 Chloroflexus_aggregans_DSM_9485_uid58621 Chloroflexus_aurantiacus_J_10_fl_uid57657 Chloroflexus_Y_400_fl_uid59085 Chloroherpeton_thalassium_ATCC_35110_uid59187 Chromobacterium_violaceum_ATCC_12472_uid58001 Chromohalobacter_salexigens_DSM_3043_uid62921 Chroococcidiopsis_thermalis_PCC_7203_uid183002 Chthonomonas_calidirosea_T49_uid208678 Citrobacter_koseri_ATCC_BAA_895_uid58143 Citrobacter_rodentium_ICC168_uid43089 Clavibacter_michiganensis_NCPPB_382_uid61625 Clavibacter_michiganensis_nebraskensis_NCPPB_2581_uid195908 Clavibacter_michiganensis_sepedonicus_uid61577 Clostridiales_genomosp__BVAB3_UPII9_5_uid46219 Clostridium_acetobutylicum_ATCC_824_uid57677 Clostridium_acetobutylicum_DSM_1731_uid68293 Clostridium_acetobutylicum_EA_2018_uid159515 Clostridium_acidurici_9a_uid176126 Clostridium_autoethanogenum_DSM_10061_uid225029 Clostridium_beijerinckii_NCIMB_8052_uid58137 Clostridium_botulinum_A2_Kyoto_uid59229 Clostridium_botulinum_A3_Loch_Maree_uid59149 Clostridium_botulinum_A_ATCC_19397_uid58927 Clostridium_botulinum_A_ATCC_3502_uid61579 Clostridium_botulinum_A_Hall_uid58931 Clostridium_botulinum_B1_Okra_uid59147 Clostridium_botulinum_Ba4_657_uid59173 Clostridium_botulinum_B_Eklund_17B_uid59159 Clostridium_botulinum_BKT015925_uid66203 Clostridium_botulinum_E3_Alaska_E43_uid59157 Clostridium_botulinum_F_230613_uid159513 Clostridium_botulinum_F_Langeland_uid58929 Clostridium_botulinum_H04402_065_uid162091 Clostridium_cellulolyticum_H10_uid58709 Clostridium_cellulovorans_743B_uid51503 Clostridium_cf__saccharolyticum_K10_uid197201 Clostridium_clariflavum_DSM_19732_uid82345 Clostridium_difficile_2007855_uid158365 Clostridium_difficile_630_uid57679 Clostridium_difficile_ATCC_43255_uid197173 Clostridium_difficile_BI1_uid158363 Clostridium_difficile_CD196_uid41017 Clostridium_difficile_CF5_uid158359 Clostridium_difficile_M120_uid158361 Clostridium_difficile_M68_uid197172 Clostridium_difficile_R20291_uid40921 Clostridium_kluyveri_DSM_555_uid58885 Clostridium_kluyveri_NBRC_12016_uid59369 Clostridium_lentocellum_DSM_5427_uid49117 Clostridium_ljungdahlii_DSM_13528_uid50583 Clostridium_novyi_NT_uid58643 Clostridium_pasteurianum_BC1_uid201478 Clostridium_perfringens_13_uid57681 Clostridium_perfringens_ATCC_13124_uid57901 Clostridium_perfringens_SM101_uid58117 Clostridium_phytofermentans_ISDg_uid58519 Clostridium_saccharobutylicum_DSM_13864_uid223284 Clostridium_saccharolyticum_WM1_uid51419 Clostridium_saccharoperbutylacetonicum_ATCC_27021_uid189747 Clostridium_stercorarium_DSM_8532_uid186819 Clostridium_stercorarium_DSM_8532_uid195569 _Clostridium__sticklandii_uid59585 Clostridium_SY8519_uid68705 Clostridium_tetani_12124569_uid227214 Clostridium_tetani_E88_uid57683 Clostridium_thermocellum_ATCC_27405_uid57917 Clostridium_thermocellum_DSM_1313_uid161989 Collimonas_fungivorans_Ter331_uid70793 Colwellia_psychrerythraea_34H_uid57855 Comamonadaceae_bacterium_CR_uid223378 Comamonas_testosteroni_CNB_2_uid62961 Conexibacter_woesei_DSM_14684_uid43467 Coprococcus_ART55_1_uid197176 +NCBI_bacterial_9.bundle : Coprococcus_catus_GD_7_uid197174 Coprothermobacter_proteolyticus_DSM_5265_uid59253 Coraliomargarita_akajimensis_DSM_45221_uid47079 Corallococcus_coralloides_DSM_2259_uid157997 Coriobacterium_glomerans_PW2_uid65787 Corynebacterium_argentoratense_DSM_44202_uid217419 Corynebacterium_aurimucosum_ATCC_700975_uid59409 Corynebacterium_callunae_DSM_20147_uid193714 Corynebacterium_diphtheriae_241_uid83607 Corynebacterium_diphtheriae_31A_uid84309 Corynebacterium_diphtheriae_BH8_uid84311 Corynebacterium_diphtheriae_C7__beta__uid84313 Corynebacterium_diphtheriae_CDCE_8392_uid84295 Corynebacterium_diphtheriae_HC01_uid84297 Corynebacterium_diphtheriae_HC02_uid84317 Corynebacterium_diphtheriae_HC03_uid84299 Corynebacterium_diphtheriae_HC04_uid84301 Corynebacterium_diphtheriae_INCA_402_uid83605 Corynebacterium_diphtheriae_NCTC_13129_uid57691 Corynebacterium_diphtheriae_PW8_uid84303 Corynebacterium_diphtheriae_VA01_uid84305 Corynebacterium_efficiens_YS_314_uid62905 Corynebacterium_glutamicum_ATCC_13032_uid193708 Corynebacterium_glutamicum_ATCC_13032_uid57905 Corynebacterium_glutamicum_ATCC_13032_uid61611 Corynebacterium_glutamicum_MB001_uid214793 Corynebacterium_glutamicum_R_uid58897 Corynebacterium_glutamicum_SCgG1_uid207285 Corynebacterium_glutamicum_SCgG2_uid207286 Corynebacterium_halotolerans_YIM_70093___DSM_44683_uid189953 Corynebacterium_jeikeium_K411_uid58399 Corynebacterium_kroppenstedtii_DSM_44385_uid59411 Corynebacterium_maris_DSM_45190_uid214081 Corynebacterium_pseudotuberculosis_1002_uid159677 Corynebacterium_pseudotuberculosis_1_06_A_uid159665 Corynebacterium_pseudotuberculosis_258_uid167260 Corynebacterium_pseudotuberculosis_267_uid162175 Corynebacterium_pseudotuberculosis_316_uid89381 Corynebacterium_pseudotuberculosis_31_uid162167 Corynebacterium_pseudotuberculosis_3_99_5_uid83609 Corynebacterium_pseudotuberculosis_42_02_A_uid159669 Corynebacterium_pseudotuberculosis_C231_uid159675 Corynebacterium_pseudotuberculosis_CIP_52_97_uid159667 Corynebacterium_pseudotuberculosis_Cp162_uid168258 Corynebacterium_pseudotuberculosis_FRC41_uid50585 Corynebacterium_pseudotuberculosis_I19_uid159673 Corynebacterium_pseudotuberculosis_P54B96_uid157909 Corynebacterium_pseudotuberculosis_PAT10_uid159671 Corynebacterium_resistens_DSM_45100_uid50555 Corynebacterium_terpenotabidum_Y_11_uid210639 Corynebacterium_ulcerans_0102_uid169879 Corynebacterium_ulcerans_809_uid159659 Corynebacterium_ulcerans_BR_AD22_uid68291 Corynebacterium_urealyticum_DSM_7109_uid61639 Corynebacterium_urealyticum_DSM_7111_uid188688 Corynebacterium_variabile_DSM_44702_uid62003 Coxiella_burnetii_CbuG_Q212_uid58893 Coxiella_burnetii_CbuK_Q154_uid58895 Coxiella_burnetii_Dugway_5J108_111_uid58629 Coxiella_burnetii_RSA_331_uid58637 Coxiella_burnetii_RSA_493_uid57631 Crinalium_epipsammum_PCC_9333_uid183113 Croceibacter_atlanticus_HTCC2559_uid49661 Cronobacter_sakazakii_45402_uid231516 Cronobacter_sakazakii_ATCC_BAA_894_uid58145 Cronobacter_sakazakii_ES15_uid167045 Cronobacter_sakazakii_Sp291_uid189241 Cronobacter_turicensis_z3032_uid40821 Cryptobacterium_curtum_DSM_15641_uid59041 Cupriavidus_metallidurans_CH34_uid57815 Cupriavidus_necator_N_1_uid68689 Cupriavidus_taiwanensis_LMG_19424_uid61615 Cyanobacterium_PCC_10605_uid183340 Cyanobacterium_stanieri_PCC_7202_uid183337 cyanobacterium_UCYN_A_uid43697 Cyanobium_gracile_PCC_6307_uid182931 Cyanothece_ATCC_51142_uid59013 Cyanothece_PCC_7424_uid59025 Cyanothece_PCC_7425_uid59435 Cyanothece_PCC_7822_uid52547 Cyanothece_PCC_8801_uid59027 Cyanothece_PCC_8802_uid59143 Cyclobacterium_marinum_DSM_745_uid71485 Cycloclasticus_P1_uid176368 Cycloclasticus_zancles_7_ME_uid214092 Cylindrospermum_stagnale_PCC_7417_uid183111 Cytophaga_hutchinsonii_ATCC_33406_uid57651 Dactylococcopsis_salina_PCC_8305_uid183341 Dechloromonas_aromatica_RCB_uid58025 Dechlorosoma_suillum_PS_uid81439 Deferribacter_desulfuricans_SSM1_uid46653 Dehalobacter_11DCA_uid177715 Dehalobacter_CF_uid177714 Dehalococcoides_BAV1_uid58477 Dehalococcoides_CBDB1_uid58413 Dehalococcoides_ethenogenes_195_uid57763 Dehalococcoides_GT_uid42115 Dehalococcoides_mccartyi_BTF08_uid190183 Dehalococcoides_mccartyi_DCMB5_uid190184 Dehalococcoides_mccartyi_GY50_uid230266 Dehalococcoides_VS_uid42393 Dehalogenimonas_lykanthroporepellens_BL_DC_9_uid48131 Deinococcus_deserti_VCD115_uid58615 Deinococcus_geothermalis_DSM_11300_uid58275 Deinococcus_gobiensis_I_0_uid162509 Deinococcus_maricopensis_DSM_21211_uid62225 Deinococcus_peraridilitoris_DSM_19664_uid183485 +NCBI_bacterial_10.bundle : Deinococcus_proteolyticus_MRP_uid63399 Deinococcus_radiodurans_R1_uid57665 Delftia_acidovorans_SPH_1_uid58703 Delftia_Cs1_4_uid67319 delta_proteobacterium_BABL1_uid230716 Denitrovibrio_acetiphilus_DSM_12809_uid46657 Desulfarculus_baarsii_DSM_2075_uid51371 Desulfatibacillum_alkenivorans_AK_01_uid58913 Desulfitobacterium_dehalogenans_ATCC_51507_uid82553 Desulfitobacterium_dichloroeliminans_LMG_P_21439_uid82555 Desulfitobacterium_hafniense_DCB_2_uid57749 Desulfitobacterium_hafniense_Y51_uid58605 Desulfobacca_acetoxidans_DSM_11109_uid65785 Desulfobacterium_autotrophicum_HRM2_uid59061 Desulfobacula_toluolica_Tol2_uid175777 Desulfobulbus_propionicus_DSM_2032_uid62265 Desulfocapsa_sulfexigens_DSM_10523_uid189952 Desulfococcus_oleovorans_Hxd3_uid58777 Desulfohalobium_retbaense_DSM_5692_uid59183 Desulfomicrobium_baculatum_DSM_4028_uid59217 Desulfomonile_tiedjei_DSM_6799_uid168320 Desulfosporosinus_acidiphilus_SJ4_uid156759 Desulfosporosinus_meridiei_DSM_13257_uid75097 Desulfosporosinus_orientis_DSM_765_uid82939 Desulfotalea_psychrophila_LSv54_uid58153 Desulfotomaculum_acetoxidans_DSM_771_uid59109 Desulfotomaculum_carboxydivorans_CO_1_SRB_uid67317 Desulfotomaculum_gibsoniae_DSM_7213_uid76945 Desulfotomaculum_kuznetsovii_DSM_6115_uid67357 Desulfotomaculum_reducens_MI_1_uid58277 Desulfotomaculum_ruminis_DSM_2154_uid67507 Desulfovibrio_aespoeensis_Aspo_2_uid42613 Desulfovibrio_africanus_Walvis_Bay_uid66847 Desulfovibrio_alaskensis_G20_uid57941 Desulfovibrio_desulfuricans_ATCC_27774_uid59213 Desulfovibrio_desulfuricans_ND132_uid63159 Desulfovibrio_gigas_DSM_1382_uid221293 Desulfovibrio_hydrothermalis_AM13___DSM_14728_uid184831 Desulfovibrio_magneticus_RS_1_uid59309 Desulfovibrio_piezophilus_C1TLV30_uid190704 Desulfovibrio_salexigens_DSM_2638_uid59223 Desulfovibrio_vulgaris_DP4_uid58679 Desulfovibrio_vulgaris_Hildenborough_uid57645 Desulfovibrio_vulgaris__Miyazaki_F__uid59089 Desulfovibrio_vulgaris_RCH1_uid161961 Desulfurispirillum_indicum_S5_uid45897 Desulfurivibrio_alkaliphilus_AHT2_uid49487 Desulfurobacterium_thermolithotrophum_DSM_11699_uid63405 Desulfurococcus_fermentans_DSM_16532_uid75119 Desulfurococcus_kamchatkensis_1221n_uid59133 Desulfurococcus_mucosus_DSM_2162_uid62227 Dichelobacter_nodosus_VCS1703A_uid57643 Dickeya_dadantii_3937_uid52537 Dickeya_dadantii_Ech586_uid42519 Dickeya_dadantii_Ech703_uid59363 Dickeya_zeae_Ech1591_uid59297 Dictyoglomus_thermophilum_H_6_12_uid59439 Dictyoglomus_turgidum_DSM_6724_uid59177 Dinoroseobacter_shibae_DFL_12_uid58707 Dyadobacter_fermentans_DSM_18053_uid59049 Echinicola_vietnamensis_DSM_17526_uid184076 Ectothiorhodospiraceae_bacterium_M19_40_uid199898 Edwardsiella_ictaluri_93_146_uid59403 Edwardsiella_tarda_C07_087_uid193773 Edwardsiella_tarda_EIB202_uid41819 Edwardsiella_tarda_FL6_60_uid159657 Eggerthella_lenta_DSM_2243_uid59079 Eggerthella_YY7918_uid68707 Ehrlichia_canis_Jake_uid58071 Ehrlichia_chaffeensis_Arkansas_uid57933 Ehrlichia_muris_AS145_uid232250 Ehrlichia_ruminantium_Gardel_uid58245 Ehrlichia_ruminantium_Welgevonden_uid58013 Ehrlichia_ruminantium_Welgevonden_uid58243 Elusimicrobium_minutum_Pei191_uid58949 Enterobacter_638_uid58727 Emticicia_oligotrophica_DSM_17448_uid177079 Enterobacter_aerogenes_EA1509E_uid187411 Enterobacter_aerogenes_KCTC_2190_uid68103 Enterobacter_asburiae_LF7a_uid72793 Enterobacter_cloacae_ATCC_13047_uid48363 Enterobacter_cloacae_dissolvens_SDM_uid168997 Enterobacter_cloacae_EcWSU1_uid80739 Enterobacter_cloacae_ENHKU01_uid172463 Enterobacter_cloacae_NCTC_9394_uid197202 Enterobacter_cloacae_SCF1_uid59969 +NCBI_bacterial_11.bundle : Enterobacteriaceae_bacterium_FGI_57_uid185181 Enterobacter_R4_368_uid208672 Enterococcus_7L76_uid197170 Enterococcus_casseliflavus_EC20_uid55693 Enterococcus_faecalis_62_uid159663 Enterococcus_faecalis_D32_uid171261 Enterococcus_faecalis_OG1RF_uid54927 Enterococcus_faecalis_Symbioflor_1_uid183342 Enterococcus_faecalis_V583_uid57669 Enterococcus_faecium_Aus0004_uid87025 Enterococcus_faecium_Aus0085_uid214432 Enterococcus_faecium_DO_uid55353 Enterococcus_faecium_NRRL_B_2354_uid188477 Enterococcus_hirae_ATCC_9790_uid70619 Enterococcus_mundtii_QU_25_uid229420 Erwinia_amylovora_ATCC_49946_uid46943 Erwinia_amylovora_CFBP1430_uid46839 Erwinia_billingiae_Eb661_uid50547 Erwinia_Ejp617_uid159955 Erwinia_pyrifoliae_DSM_12163_uid159693 Erwinia_pyrifoliae_Ep1_96_uid40659 Erwinia_tasmaniensis_Et1_99_uid59029 Erysipelothrix_rhusiopathiae_Fujisawa_uid68021 Erysipelothrix_rhusiopathiae_SY1027_uid206518 Erythrobacter_litoralis_HTCC2594_uid58299 Escherichia_blattae_DSM_4481_uid165043 Escherichia_coli_042_uid161985 Escherichia_coli_536_uid58531 Escherichia_coli_55989_uid59383 Escherichia_coli_ABU_83972_uid161975 Escherichia_coli_APEC_O1_uid58623 Escherichia_coli_APEC_O78_uid187277 Escherichia_coli_ATCC_8739_uid58783 Escherichia_coli_BL21_DE3__uid161947 Escherichia_coli_BL21_DE3__uid161949 Escherichia_coli__BL21_Gold_DE3_pLysS_AG__uid59245 Escherichia_coli_B_REL606_uid58803 Escherichia_coli_BW2952_uid59391 Escherichia_coli_CFT073_uid57915 Escherichia_coli__clone_D_i14__uid162049 Escherichia_coli__clone_D_i2__uid162047 Escherichia_coli_DH1_uid161951 Escherichia_coli_DH1_uid162051 Escherichia_coli_E24377A_uid58395 Escherichia_coli_ED1a_uid59379 Escherichia_coli_ETEC_H10407_uid161993 Escherichia_coli_HS_uid58393 Escherichia_coli_IAI1_uid59377 Escherichia_coli_IAI39_uid59381 Escherichia_coli_IHE3034_uid162007 Escherichia_coli_JJ1886_uid226103 Escherichia_coli_K_12_substr__DH10B_uid58979 Escherichia_coli_K_12_substr__MDS42_uid193705 Escherichia_coli_K_12_substr__MG1655_uid57779 Escherichia_coli_K_12_substr__W3110_uid161931 Escherichia_coli_KO11FL_uid162099 Escherichia_coli_KO11FL_uid52593 Escherichia_coli_LF82_uid161965 Escherichia_coli_LY180_uid219461 Escherichia_coli_NA114_uid162139 Escherichia_coli_O103_H2_12009_uid41013 Escherichia_coli_O104_H4_2009EL_2050_uid175905 Escherichia_coli_O104_H4_2009EL_2071_uid176128 Escherichia_coli_O104_H4_2011C_3493_uid176127 Escherichia_coli_O111_H__11128_uid41023 Escherichia_coli_O127_H6_E2348_69_uid59343 Escherichia_coli_O157_H7_EC4115_uid59091 Escherichia_coli_O157_H7_EDL933_uid57831 Escherichia_coli_O157_H7_TW14359_uid59235 Escherichia_coli_O157_H7_uid57781 Escherichia_coli_O26_H11_11368_uid41021 Escherichia_coli_O55_H7_CB9615_uid46655 Escherichia_coli_O55_H7_RM12579_uid162153 Escherichia_coli_O7_K1_CE10_uid162115 Escherichia_coli_O83_H1_NRG_857C_uid161987 Escherichia_coli_P12b_uid162061 Escherichia_coli_PMV_1_uid219679 Escherichia_coli_S88_uid62979 Escherichia_coli_SE11_uid59425 Escherichia_coli_SE15_uid161939 Escherichia_coli_SMS_3_5_uid58919 +NCBI_bacterial_12.bundle : Escherichia_coli_UM146_uid162043 Escherichia_coli_UMN026_uid62981 Escherichia_coli_UMNK88_uid161991 Escherichia_coli_UTI89_uid58541 Escherichia_coli_W_uid162011 Escherichia_coli_W_uid162101 Escherichia_coli_Xuzhou21_uid163995 Escherichia_fergusonii_ATCC_35469_uid59375 Ethanoligenens_harbinense_YUAN_3_uid46255 Eubacterium_cylindroides_T2_87_uid197177 Eubacterium_eligens_ATCC_27750_uid59171 Eubacterium_limosum_KIST612_uid59777 Eubacterium_rectale_ATCC_33656_uid59169 Eubacterium_rectale_uid197161 Eubacterium_rectale_uid197162 Eubacterium_siraeum_uid197160 Eubacterium_siraeum_V10Sc8a_uid197178 Exiguobacterium_antarcticum_B7_uid176125 Exiguobacterium_AT1b_uid59093 Exiguobacterium_MH3_uid227425 Exiguobacterium_sibiricum_255_15_uid58053 Faecalibacterium_prausnitzii_L2_6_uid197183 Faecalibacterium_prausnitzii_uid197157 Ferrimonas_balearica_DSM_9799_uid53371 Ferroglobus_placidus_DSM_10642_uid40863 Ferroplasma_acidarmanus_fer1_uid54095 Fervidicoccus_fontis_Kam940_uid162201 Fervidobacterium_nodosum_Rt17_B1_uid58625 Fervidobacterium_pennivorans_DSM_9078_uid78143 Fibrella_aestuarina_uid178352 Fibrobacter_succinogenes_S85_uid161919 Fibrobacter_succinogenes_S85_uid41169 Filifactor_alocis_ATCC_35896_uid46625 Finegoldia_magna_ATCC_29328_uid58867 Flavobacteriaceae_bacterium_3519_10_uid59413 Flavobacteriales_bacterium_HTCC2170_uid51877 Flavobacterium_branchiophilum_FL_15_uid73421 Flavobacterium_columnare_ATCC_49512_uid80731 Flavobacterium_indicum_GPTSA100_9_uid157999 Flavobacterium_johnsoniae_UW101_uid58493 Flavobacterium_psychrophilum_JIP02_86_uid61627 Flexibacter_litoralis_DSM_6794_uid168257 Flexistipes_sinusarabici_DSM_4947_uid68147 Fluviicola_taffensis_DSM_16823_uid65271 Francisella_cf__novicida_3523_uid162107 Francisella_cf__novicida_Fx1_uid162105 Francisella_noatunensis_orientalis_LADL_07_285A_uid231515 Francisella_noatunensis_orientalis_Toba_04_uid164779 Francisella_novicida_U112_uid58499 Francisella_philomiragia_ATCC_25017_uid59105 Francisella_tularensis_FSC198_uid58693 Francisella_tularensis_holarctica_F92_uid181998 Francisella_tularensis_holarctica_FSC200_uid54341 Francisella_tularensis_holarctica_FTNF002_00_uid58999 Francisella_tularensis_holarctica_LVS_uid58595 Francisella_tularensis_holarctica_OSU18_uid58687 Francisella_tularensis_mediasiatica_FSC147_uid58939 Francisella_tularensis_NE061598_uid161973 Francisella_tularensis_SCHU_S4_uid57589 Francisella_tularensis_TI0902_uid89373 Francisella_tularensis_TIGB03_uid89379 Francisella_tularensis_WY96_3418_uid58811 Francisella_TX077308_uid68321 Frankia_alni_ACN14a_uid58695 Frankia_CcI3_uid58397 Frankia_EAN1pec_uid58367 Frankia_EuI1c_uid42615 Frankia_symbiont_of_Datisca_glomerata_uid46257 Frateuria_aurantia_DSM_6220_uid81775 Fusobacterium_3_1_36A2_uid55995 Fusobacterium_4_8_uid205051 Fusobacterium_nucleatum_ATCC_25586_uid57885 Fusobacterium_nucleatum_polymorphum_ATCC_10953_uid54419 Gallibacterium_anatis_UMN179_uid66567 Gallionella_capsiferriformans_ES_2_uid51505 gamma_proteobacterium_HdN1_uid51635 Gardnerella_vaginalis_409_05_uid43211 Gardnerella_vaginalis_ATCC_14019_uid55487 Gardnerella_vaginalis_HMP9231_uid162045 Geitlerinema_PCC_7407_uid183007 Gemmatimonas_aurantiaca_T_27_uid58813 Geobacillus_C56_T3_uid49467 Geobacillus_HH01_uid188479 Geobacillus_JF8_uid215234 Geobacillus_kaustophilus_HTA426_uid58227 Geobacillus_thermodenitrificans_NG80_2_uid58829 Geobacillus_thermoglucosidasius_C56_YS93_uid48129 Geobacillus_thermoleovorans_CCB_US3_UF5_uid82949 Geobacillus_WCH70_uid59045 Geobacillus_Y412MC52_uid55381 Geobacillus_Y412MC61_uid41171 Geobacillus_Y4_1MC1_uid55779 Geobacter_bemidjiensis_Bem_uid58749 Geobacter_FRC_32_uid58543 Geobacter_lovleyi_SZ_uid58713 Geobacter_M18_uid55771 Geobacter_M21_uid59037 Geobacter_metallireducens_GS_15_uid57731 Geobacter_sulfurreducens_KN400_uid161977 +NCBI_bacterial_13.bundle : Geobacter_sulfurreducens_PCA_uid57743 Geobacter_uraniireducens_Rf4_uid58475 Geodermatophilus_obscurus_DSM_43160_uid43725 Glaciecola_4H_3_7_YE_5_uid66595 Glaciecola_nitratireducens_FR1064_uid73759 Glaciecola_psychrophila_170_uid193711 Gloeobacter_JS_uid225602 Gloeobacter_violaceus_PCC_7421_uid58011 Gloeocapsa_PCC_7428_uid183112 Gluconacetobacter_diazotrophicus_PAl_5_uid59075 Gluconacetobacter_diazotrophicus_PAl_5_uid61587 Gluconacetobacter_xylinus_NBRC_3288_uid46523 Gluconobacter_oxydans_621H_uid58239 Gluconobacter_oxydans_H24_uid179202 Gordonia_bronchialis_DSM_43247_uid41403 Gordonia_KTR9_uid174812 Gordonia_polyisoprenivorans_VH2_uid86651 Gordonibacter_pamelaeae_7_10_1_b_uid197167 Gramella_forsetii_KT0803_uid58881 Granulibacter_bethesdensis_CGDNIH1_uid58661 Granulicella_mallensis_MP5ACTX8_uid49957 Haemophilus_ducreyi_35000HP_uid57625 Haemophilus_influenzae_10810_uid86647 Haemophilus_influenzae_86_028NP_uid58093 Haemophilus_influenzae_F3031_uid62123 Haemophilus_influenzae_F3047_uid62097 Haemophilus_influenzae_KR494_uid219323 Haemophilus_influenzae_PittEE_uid58591 Haemophilus_influenzae_PittGG_uid58593 Haemophilus_influenzae_R2846_uid161921 Haemophilus_influenzae_R2866_uid161923 Haemophilus_influenzae_Rd_KW20_uid57771 Haemophilus_parainfluenzae_T3T1_uid72801 Haemophilus_parasuis_SH0165_uid59273 Haemophilus_parasuis_ZJ0906_uid209117 Haemophilus_somnus_129PT_uid57929 Haemophilus_somnus_2336_uid57979 Hahella_chejuensis_KCTC_2396_uid58483 Halalkalicoccus_jeotgali_B3_uid50305 Halanaerobium_hydrogeniformans_uid60191 Halanaerobium_praevalens_DSM_2228_uid161959 Haliangium_ochraceum_DSM_14365_uid41425 Haliscomenobacter_hydrossis_DSM_1100_uid66777 Haloarcula_hispanica_ATCC_33960_uid72475 Haloarcula_hispanica_N601_uid230920 Haloarcula_marismortui_ATCC_43049_uid57719 Halobacillus_halophilus_DSM_2266_uid162033 Halobacterium_NRC_1_uid57769 Halobacterium_salinarum_R1_uid61571 Halobacteroides_halobius_DSM_5150_uid184862 Haloferax_mediterranei_ATCC_33500_uid167315 Haloferax_volcanii_DS2_uid46845 Halogeometricum_borinquense_DSM_11551_uid54919 Halomicrobium_mukohataei_DSM_12286_uid59107 Halomonas_elongata_DSM_2581_uid52781 halophilic_archaeon_DL31_uid72619 Halopiger_xanaduensis_SH_6_uid68105 Haloquadratum_walsbyi_C23_uid162019 Haloquadratum_walsbyi_DSM_16790_uid58673 Halorhabdus_tiamatea_SARL4B_uid214082 Halorhabdus_utahensis_DSM_12940_uid59189 Halorhodospira_halophila_SL1_uid58473 Halorubrum_lacusprofundi_ATCC_49239_uid58807 Haloterrigena_turkmenica_DSM_5511_uid43501 Halothece_PCC_7418_uid183338 Halothermothrix_orenii_H_168_uid58585 Halothiobacillus_neapolitanus_c2_uid41317 Halovivax_ruber_XH_70_uid184819 Halyomorpha_halys_symbiont_uid222821 Helicobacter_acinonychis_Sheeba_uid58685 Helicobacter_bizzozeronii_CIII_1_uid68141 Helicobacter_cetorum_MIT_00_7128_uid162217 Helicobacter_cetorum_MIT_99_5656_uid162215 Helicobacter_cinaedi_ATCC_BAA_847_uid193765 Helicobacter_cinaedi_PAGU611_uid162219 Helicobacter_felis_ATCC_49179_uid61409 Helicobacter_heilmannii_ASB1_4_uid182935 Helicobacter_hepaticus_ATCC_51449_uid57737 Helicobacter_mustelae_12198_uid46647 Helicobacter_pylori_2017_uid161151 Helicobacter_pylori_2018_uid161159 Helicobacter_pylori_26695_uid178201 Helicobacter_pylori_26695_uid57787 Helicobacter_pylori_35A_uid49903 Helicobacter_pylori_51_uid161925 Helicobacter_pylori_83_uid161153 Helicobacter_pylori_908_uid159985 Helicobacter_pylori_Aklavik117_uid182201 Helicobacter_pylori_Aklavik86_uid182202 Helicobacter_pylori_B38_uid59415 Helicobacter_pylori_B8_uid49873 Helicobacter_pylori_BM012A_uid229744 Helicobacter_pylori_BM012S_uid229881 Helicobacter_pylori_Cuz20_uid159987 Helicobacter_pylori_ELS37_uid158157 Helicobacter_pylori_F16_uid161145 Helicobacter_pylori_F30_uid159991 Helicobacter_pylori_F32_uid161139 Helicobacter_pylori_F57_uid161143 Helicobacter_pylori_G27_uid59305 Helicobacter_pylori_Gambia94_24_uid159493 Helicobacter_pylori_HPAG1_uid58517 Helicobacter_pylori_HUP_B14_uid162213 Helicobacter_pylori_India7_uid161149 Helicobacter_pylori_J99_uid57789 Helicobacter_pylori_Lithuania75_uid159491 Helicobacter_pylori_OK113_uid193715 Helicobacter_pylori_OK310_uid193716 Helicobacter_pylori_P12_uid59327 Helicobacter_pylori_PeCan18_uid162211 +NCBI_bacterial_14.bundle : Helicobacter_pylori_PeCan4_uid53539 Helicobacter_pylori_Puno120_uid159611 Helicobacter_pylori_Puno135_uid161157 Helicobacter_pylori_Rif1_uid178202 Helicobacter_pylori_Rif2_uid178203 Helicobacter_pylori_Sat464_uid159467 Helicobacter_pylori_Shi112_uid162207 Helicobacter_pylori_Shi169_uid162209 Helicobacter_pylori_Shi417_uid162205 Helicobacter_pylori_Shi470_uid59165 Helicobacter_pylori_SJM180_uid53541 Helicobacter_pylori_SNT49_uid159615 Helicobacter_pylori_SouthAfrica20_uid216150 Helicobacter_pylori_SouthAfrica7_uid159989 Helicobacter_pylori_uid159983 Helicobacter_pylori_UM032_uid203025 Helicobacter_pylori_UM037_uid203027 Helicobacter_pylori_UM066_uid203028 Helicobacter_pylori_UM298_uid213226 Helicobacter_pylori_UM299_uid203026 Helicobacter_pylori_v225d_uid159639 Helicobacter_pylori_XZ274_uid165869 Heliobacterium_modesticaldum_Ice1_uid58279 Herbaspirillum_seropedicae_SmR1_uid50427 Herminiimonas_arsenicoxydans_uid58291 Herpetosiphon_aurantiacus_DSM_785_uid58599 Hippea_maritima_DSM_10411_uid65267 Hirschia_baltica_ATCC_49814_uid59365 Hydrogenobacter_thermophilus_TK_6_uid159875 Hydrogenobacter_thermophilus_TK_6_uid45927 Hydrogenobaculum_HO_uid190882 Hydrogenobaculum_SN_uid46251 Hydrogenobaculum_Y04AAS1_uid58857 Hyperthermus_butylicus_DSM_5456_uid57755 Hyphomicrobium_denitrificans_1NES1_uid179904 Hyphomicrobium_denitrificans_ATCC_51888_uid50325 Hyphomicrobium_MC1_uid68453 Hyphomicrobium_nitrativorans_NL23_uid230615 Hyphomonas_neptunium_ATCC_15444_uid58433 Idiomarina_loihiensis_GSL_199_uid205256 Idiomarina_loihiensis_L2TR_uid58087 Ignavibacterium_album_JCM_16511_uid162097 Ignicoccus_hospitalis_KIN4_I_uid58365 Ignisphaera_aggregans_DSM_17230_uid51875 Ilyobacter_polytropus_DSM_2926_uid59769 Intrasporangium_calvum_DSM_43043_uid61729 Isoptericola_variabilis_225_uid67501 Isosphaera_pallida_ATCC_43644_uid62207 Jannaschia_CCS1_uid58147 Janthinobacterium_Marseille_uid58603 Jonesia_denitrificans_DSM_20603_uid59053 Kangiella_koreensis_DSM_16069_uid59209 Ketogulonicigenium_vulgare_WSH_001_uid161161 Ketogulonicigenium_vulgare_Y25_uid59581 Kineococcus_radiotolerans_SRS30216_uid58067 Kitasatospora_setae_KM_6054_uid77027 Klebsiella_oxytoca_E718_uid170256 Klebsiella_oxytoca_KCTC_1686_uid83159 Klebsiella_pneumoniae_1084_uid174151 Klebsiella_pneumoniae_342_uid59145 Klebsiella_pneumoniae_CG43_uid223021 Klebsiella_pneumoniae_HS11286_uid84387 Klebsiella_pneumoniae_JM45_uid215235 Klebsiella_pneumoniae_KCTC_2242_uid162147 Klebsiella_pneumoniae_MGH_78578_uid57619 Klebsiella_pneumoniae_NTUH_K2044_uid59073 Klebsiella_pneumoniae_uid203334 Klebsiella_variicola_At_22_uid42113 Kocuria_rhizophila_DC2201_uid59099 Kosmotoga_olearia_TBF_19_5_1_uid59205 Kribbella_flavida_DSM_17836_uid43465 Krokinobacter_4H_3_7_5_uid66593 Kyrpidia_tusciae_DSM_2912_uid48361 Kytococcus_sedentarius_DSM_20547_uid59071 Lacinutrix_5H_3_7_4_uid68067 Lactobacillus_acidophilus_30SC_uid63605 Lactobacillus_acidophilus_La_14_uid201479 Lactobacillus_acidophilus_NCFM_uid57685 Lactobacillus_amylovorus_GRL_1112_uid61179 Lactobacillus_amylovorus_GRL1118_uid160233 Lactobacillus_brevis_ATCC_367_uid57989 Lactobacillus_brevis_KB290_uid195560 Lactobacillus_buchneri_NRRL_B_30929_uid66205 Lactobacillus_buchneri_uid73657 Lactobacillus_casei_ATCC_334_uid57985 Lactobacillus_casei_BD_II_uid162119 Lactobacillus_casei_BL23_uid59237 Lactobacillus_casei_LC2W_uid162121 Lactobacillus_casei_LOCK919_uid210959 Lactobacillus_casei_W56_uid178736 Lactobacillus_casei_Zhang_uid50673 Lactobacillus_crispatus_ST1_uid48359 Lactobacillus_delbrueckii_bulgaricus_2038_uid161929 Lactobacillus_delbrueckii_bulgaricus_ATCC_11842_uid58647 Lactobacillus_delbrueckii_bulgaricus_ATCC_BAA_365_uid57987 Lactobacillus_delbrueckii_bulgaricus_ND02_uid60621 Lactobacillus_fermentum_CECT_5716_uid162003 Lactobacillus_fermentum_F6_uid203391 Lactobacillus_fermentum_IFO_3956_uid58865 Lactobacillus_gasseri_ATCC_33323_uid57687 Lactobacillus_helveticus_CNRZ32_uid212302 Lactobacillus_helveticus_DPC_4571_uid58761 Lactobacillus_helveticus_H10_uid162017 Lactobacillus_helveticus_R0052_uid174439 Lactobacillus_johnsonii_DPC_6026_uid162057 Lactobacillus_johnsonii_FI9785_uid41735 Lactobacillus_johnsonii_N6_2_uid229876 Lactobacillus_johnsonii_NCC_533_uid58029 Lactobacillus_kefiranofaciens_ZW3_uid67985 Lactobacillus_paracasei_8700_2_uid55295 Lactobacillus_plantarum_16_uid209042 Lactobacillus_plantarum_JDM1_uid59361 +NCBI_bacterial_15.bundle : Lactobacillus_plantarum_P8_uid203333 Lactobacillus_plantarum_ST_III_uid53537 Lactobacillus_plantarum_WCFS1_uid62911 Lactobacillus_plantarum_ZJ316_uid188689 Lactobacillus_reuteri_DSM_20016_uid58471 Lactobacillus_reuteri_I5007_uid208677 Lactobacillus_reuteri_JCM_1112_uid58875 Lactobacillus_reuteri_SD2112_uid55357 Lactobacillus_reuteri_TD1_uid213089 Lactobacillus_rhamnosus_ATCC_8530_uid162169 Lactobacillus_rhamnosus_GG_uid161983 Lactobacillus_rhamnosus_GG_uid59313 Lactobacillus_rhamnosus_Lc_705_uid59315 Lactobacillus_rhamnosus_LOCK900_uid210957 Lactobacillus_rhamnosus_LOCK908_uid210958 Lactobacillus_ruminis_ATCC_27782_uid73417 Lactobacillus_sakei_23K_uid58281 Lactobacillus_salivarius_CECT_5713_uid162005 Lactobacillus_salivarius_UCC118_uid58233 Lactobacillus_sanfranciscensis_TMW_1_1304_uid72937 Lactococcus_garvieae_ATCC_49156_uid73413 Lactococcus_garvieae_Lg2_uid161935 Lactococcus_lactis_cremoris_A76_uid160937 Lactococcus_lactis_cremoris_KW2_uid219629 Lactococcus_lactis_cremoris_MG1363_uid58837 Lactococcus_lactis_cremoris_NZ9000_uid167481 Lactococcus_lactis_cremoris_SK11_uid57983 Lactococcus_lactis_cremoris_UC509_9_uid179384 Lactococcus_lactis_CV56_uid160253 Lactococcus_lactis_Il1403_uid57671 Lactococcus_lactis_IO_1_uid192185 Lactococcus_lactis_KF147_uid42831 Lactococcus_lactis_KLDS_4_0325_uid225028 Laribacter_hongkongensis_HLHK9_uid59265 Lawsonia_intracellularis_N343_uid186598 Lawsonia_intracellularis_PHE_MN1_00_uid61575 Leadbetterella_byssophila_DSM_17132_uid60161 Legionella_longbeachae_NSW150_uid46099 Legionella_pneumophila_2300_99_Alcoy_uid48801 Legionella_pneumophila_ATCC_43290_uid86885 Legionella_pneumophila_Corby_uid58733 Legionella_pneumophila_Hextuple_2q_uid197191 Legionella_pneumophila_Hextuple_3a_uid197192 Legionella_pneumophila_Lens_uid58209 Legionella_pneumophila_Lorraine_uid170535 Legionella_pneumophila_Paris_uid58211 Legionella_pneumophila_Philadelphia_1_uid193710 Legionella_pneumophila_Philadelphia_1_uid57609 Legionella_pneumophila_Thunder_Bay_uid206517 Legionella_pneumophila_uid170534 Leifsonia_xyli_CTCB07_uid57759 Leifsonia_xyli_cynodontis_DSM_46306_uid221294 Leisingera_methylohalidivorans_DSM_14336_uid232356 Leptolyngbya_PCC_7376_uid182928 Leptospira_biflexa_serovar_Patoc__Patoc_1__Ames__uid58511 Leptospira_biflexa_serovar_Patoc__Patoc_1__Paris__uid58993 Leptospira_borgpetersenii_serovar_Hardjo_bovis_JB197_uid58509 Leptospira_borgpetersenii_serovar_Hardjo_bovis_L550_uid58507 Leptospira_interrogans_serovar_Copenhageni_Fiocruz_L1_130_uid58065 Leptospira_interrogans_serovar_Lai_56601_uid57881 Leptospira_interrogans_serovar_Lai_IPAV_uid161957 Leptospirillum_ferriphilum_ML_04_uid175904 Leptospirillum_ferrooxidans_C2_3_uid158171 Leptothrix_cholodnii_SP_6_uid58971 Leptotrichia_buccalis_C_1013_b_uid59211 Leuconostoc_C2_uid68743 Leuconostoc_carnosum_JB16_uid176371 Leuconostoc_citreum_KM20_uid58481 Leuconostoc_gasicomitatum_LMG_18811_uid50385 Leuconostoc_gelidum_JB7_uid175682 Leuconostoc_kimchii_IMSNU_11154_uid48589 Leuconostoc_mesenteroides_ATCC_8293_uid57919 Leuconostoc_mesenteroides_J18_uid84337 Listeria_innocua_Clip11262_uid61567 Listeria_ivanovii_PAM_55_uid73473 Listeria_monocytogenes_07PF0776_uid162185 Listeria_monocytogenes_08_5923_uid43727 Listeria_monocytogenes_10403S_uid54461 Listeria_monocytogenes_ATCC_19117_uid175109 Listeria_monocytogenes_Clip80459_uid59317 Listeria_monocytogenes_EGD_e_uid61583 Listeria_monocytogenes_EGD_uid223288 Listeria_monocytogenes_Finland_1998_uid54443 Listeria_monocytogenes_FSL_R2_561_uid54441 Listeria_monocytogenes_HCC23_uid59203 Listeria_monocytogenes_J0161_uid54459 Listeria_monocytogenes_J1_220_uid179735 Listeria_monocytogenes_J1816_uid179734 Listeria_monocytogenes_L312_uid175768 Listeria_monocytogenes_La111_uid193768 Listeria_monocytogenes_M7_uid162131 Listeria_monocytogenes_N53_1_uid193767 Listeria_monocytogenes_serotype_1_2b_SLCC2755_uid52455 Listeria_monocytogenes_serotype_4a_L99_uid161953 Listeria_monocytogenes_serotype_4b_F2365_uid57689 Listeria_monocytogenes_serotype_4b_LL195_uid182103 Listeria_monocytogenes_serotype_7_SLCC2482_uid174871 Listeria_monocytogenes_SLCC2372_uid174872 Listeria_monocytogenes_SLCC2376_uid175111 Listeria_monocytogenes_SLCC2378_uid175105 Listeria_monocytogenes_SLCC2479_uid175108 Listeria_monocytogenes_SLCC2540_uid175106 Listeria_monocytogenes_SLCC5850_uid175110 Listeria_monocytogenes_SLCC7179_uid175107 Listeria_monocytogenes_uid212977 Listeria_monocytogenes_uid43671 Listeria_seeligeri_serovar_1_2b_SLCC3954_uid46215 Listeria_welshimeri_serovar_6b_SLCC5334_uid61605 Listonella_anguillarum_M3_uid217771 Lysinibacillus_sphaericus_C3_41_uid58945 Macrococcus_caseolyticus_JCSC5402_uid59003 Magnetococcus_MC_1_uid57833 Magnetospirillum_gryphiswaldense_MSR_1_uid232249 Magnetospirillum_magneticum_AMB_1_uid58527 Mahella_australiensis_50_1_BON_uid66917 Mannheimia_haemolytica_D153_uid212303 Mannheimia_haemolytica_D171_uid212304 Mannheimia_haemolytica_D174_uid212305 +NCBI_bacterial_16.bundle : Mannheimia_haemolytica_M42548_uid198769 Mannheimia_haemolytica_USDA_ARS_SAM_185_uid195457 Mannheimia_haemolytica_USDA_ARS_USMARC_183_uid195458 Mannheimia_haemolytica_USMARC_2286_uid213228 Mannheimia_succiniciproducens_MBEL55E_uid58197 Maricaulis_maris_MCS10_uid58689 Marinithermus_hydrothermalis_DSM_14884_uid65783 Marinitoga_piezophila_KA3_uid81629 Marinobacter_adhaerens_HP15_uid162009 Marinobacter_aquaeolei_VT8_uid59419 Marinobacter_BSs20148_uid171995 Marinobacter_hydrocarbonoclasticus_ATCC_49840_uid162203 Marinomonas_mediterranea_MMB_1_uid64753 Marinomonas_MWYL1_uid58715 Marinomonas_posidonica_IVIA_Po_181_uid67323 Marivirga_tractuosa_DSM_4126_uid60837 Megamonas_hypermegale_uid197163 Megasphaera_elsdenii_DSM_20460_uid71135 Meiothermus_ruber_DSM_1279_uid198526 Meiothermus_ruber_DSM_1279_uid46661 Meiothermus_silvanus_DSM_9946_uid49485 Melioribacter_roseus_P3M_uid170941 Melissococcus_plutonius_ATCC_35311_uid66803 Melissococcus_plutonius_DAT561_uid89371 Mesoplasma_florum_L1_uid58055 Mesoplasma_florum_W37_uid224253 Mesorhizobium_australicum_WSM2073_uid75101 Mesorhizobium_ciceri_biovar_biserrulae_WSM1271_uid62101 Mesorhizobium_loti_MAFF303099_uid57601 Mesorhizobium_opportunistum_WSM2075_uid40861 Mesotoga_prima_MesG1_Ag_4_2_uid52599 Metallosphaera_cuprina_Ar_4_uid66329 Metallosphaera_sedula_DSM_5348_uid58717 Methanobacterium_AL_21_uid63623 Methanobacterium_MB1_uid231690 Methanobacterium_SWAN_1_uid67359 Methanobrevibacter_AbM4_uid206516 Methanobrevibacter_ruminantium_M1_uid45857 Methanobrevibacter_smithii_ATCC_35061_uid58827 Methanocaldococcus_fervens_AG86_uid59347 Methanocaldococcus_FS406_22_uid42499 Methanocaldococcus_infernus_ME_uid48803 Methanocaldococcus_jannaschii_DSM_2661_uid57713 Methanocaldococcus_vulcanius_M7_uid41131 Methanocella_arvoryzae_MRE50_uid61623 Methanocella_conradii_HZ254_uid157911 Methanocella_paludicola_SANAE_uid42887 Methanococcoides_burtonii_DSM_6242_uid58023 Methanococcus_aeolicus_Nankai_3_uid58823 Methanococcus_maripaludis_C5_uid58741 Methanococcus_maripaludis_C6_uid58947 Methanococcus_maripaludis_C7_uid58847 Methanococcus_maripaludis_S2_uid58035 Methanococcus_maripaludis_X1_uid70729 Methanococcus_vannielii_SB_uid58767 Methanococcus_voltae_A3_uid49529 Methanocorpusculum_labreanum_Z_uid58785 Methanoculleus_bourgensis_MS2_uid171377 Methanoculleus_marisnigri_JR1_uid58561 Methanohalobium_evestigatum_Z_7303_uid49857 Methanohalophilus_mahii_DSM_5219_uid47313 Methanolobus_psychrophilus_R15_uid177925 Methanomassiliicoccus_Mx1_Issoire_uid207287 Methanomethylovorans_hollandica_DSM_15978_uid184864 Methanoplanus_petrolearius_DSM_11571_uid52695 Methanopyrus_kandleri_AV19_uid57883 Methanoregula_boonei_6A8_uid58815 Methanoregula_formicicum_SMSP_uid184406 Methanosaeta_concilii_GP6_uid66207 Methanosaeta_harundinacea_6Ac_uid81199 Methanosaeta_thermophila_PT_uid58469 Methanosalsum_zhilinae_DSM_4017_uid68249 Methanosarcina_acetivorans_C2A_uid57879 Methanosarcina_barkeri_Fusaro_uid57715 Methanosarcina_mazei_Go1_uid57893 Methanosarcina_mazei_Tuc01_uid190185 Methanosphaera_stadtmanae_DSM_3091_uid58407 Methanosphaerula_palustris_E1_9c_uid59193 Methanospirillum_hungatei_JF_1_uid58181 Methanothermobacter_marburgensis_Marburg_uid51637 Methanothermobacter_thermautotrophicus_Delta_H_uid57877 Methanothermococcus_okinawensis_IH1_uid51535 Methanothermus_fervidus_DSM_2088_uid60167 Methanotorris_igneus_Kol_5_uid67321 Methylacidiphilum_infernorum_V4_uid59161 Methylibium_petroleiphilum_PM1_uid58085 Methylobacillus_flagellatus_KT_uid58049 Methylobacterium_4_46_uid58843 Methylobacterium_chloromethanicum_CM4_uid58933 Methylobacterium_extorquens_AM1_uid57605 Methylobacterium_extorquens_DM4_uid61617 Methylobacterium_extorquens_PA1_uid58821 Methylobacterium_nodulans_ORS_2060_uid59023 Methylobacterium_populi_BJ001_uid58937 Methylobacterium_radiotolerans_JCM_2831_uid58845 Methylocella_silvestris_BL2_uid59433 Methylococcus_capsulatus_Bath_uid57607 Methylocystis_SC2_uid174072 Methylomicrobium_alcaliphilum_uid77119 Methylomonas_methanica_MC09_uid67363 Methylophaga_JAM1_uid162947 Methylophaga_JAM7_uid162949 Methylotenera_301_uid49469 Methylotenera_mobilis_JLW8_uid59373 Methylovorus_glucosetrophus_SIP3_4_uid59367 Methylovorus_MP688_uid60723 Micavibrio_aeruginosavorus_ARL_13_uid73585 Micavibrio_EPB_uid194120 Microbacterium_testaceum_StLB037_uid62789 +NCBI_bacterial_17.bundle : Micrococcus_luteus_NCTC_2665_uid59033 Microcoleus_PCC_7113_uid183114 Microcystis_aeruginosa_NIES_843_uid59101 Microlunatus_phosphovorus_NM_1_uid68055 Micromonospora_aurantiaca_ATCC_27029_uid42501 Micromonospora_L5_uid45895 Mobiluncus_curtisii_ATCC_43063_uid49695 Modestobacter_marinus_uid167487 Moorella_thermoacetica_ATCC_39073_uid58051 Moraxella_catarrhalis_BBH18_uid48809 Morganella_morganii_KT_uid180867 Muricauda_ruestringensis_DSM_13258_uid72479 Mycobacterium_abscessus_bolletii_50594_uid205422 Mycobacterium_abscessus_uid61613 Mycobacterium_africanum_GM041182_uid68839 Mycobacterium_avium_104_uid57693 Mycobacterium_avium_paratuberculosis_K_10_uid57699 Mycobacterium_avium_paratuberculosis_MAP4_uid202426 Mycobacterium_bovis_AF2122_97_uid57695 Mycobacterium_bovis_BCG_Korea_1168P_uid189029 Mycobacterium_bovis_BCG_Mexico_uid86889 Mycobacterium_bovis_BCG_Pasteur_1173P2_uid58781 Mycobacterium_bovis_BCG_Tokyo_172_uid59281 Mycobacterium_canettii_CIPT_140010059_uid70731 Mycobacterium_canettii_CIPT_140060008_uid184829 Mycobacterium_canettii_CIPT_140070008_uid184832 Mycobacterium_canettii_CIPT_140070010_uid184828 Mycobacterium_canettii_CIPT_140070017_uid184830 Mycobacterium_chubuense_NBB4_uid168322 Mycobacterium_gilvum_PYR_GCK_uid59421 Mycobacterium_gilvum_Spyr1_uid61403 Mycobacterium_indicus_pranii_MTCC_9506_uid175523 Mycobacterium_intracellulare_ATCC_13950_uid167994 Mycobacterium_intracellulare_MOTT_02_uid89387 Mycobacterium_intracellulare_MOTT_64_uid89385 Mycobacterium_JDM601_uid67369 Mycobacterium_JLS_uid58489 Mycobacterium_kansasii_ATCC_12478_uid55385 Mycobacterium_KMS_uid58491 Mycobacterium_leprae_Br4923_uid59293 Mycobacterium_leprae_TN_uid57697 Mycobacterium_liflandii_128FXT_uid59005 Mycobacterium_marinum_M_uid59423 Mycobacterium_massiliense_GO_06_uid170732 Mycobacterium_MCS_uid58465 Mycobacterium_MOTT36Y_uid164001 Mycobacterium_rhodesiae_NBB3_uid75107 Mycobacterium_smegmatis_JS623_uid184820 Mycobacterium_smegmatis_MC2_155_uid171958 Mycobacterium_smegmatis_MC2_155_uid57701 Mycobacterium_tuberculosis_Beijing_NITR203_uid197218 Mycobacterium_tuberculosis_CAS_NITR204_uid202217 Mycobacterium_tuberculosis_CCDC5079_uid161943 Mycobacterium_tuberculosis_CCDC5079_uid203790 Mycobacterium_tuberculosis_CCDC5180_uid161941 Mycobacterium_tuberculosis_CDC1551_uid57775 Mycobacterium_tuberculosis_CTRI_2_uid161997 Mycobacterium_tuberculosis_EAI5_NITR206_uid202218 Mycobacterium_tuberculosis_EAI5_uid212307 Mycobacterium_tuberculosis_Erdman___ATCC_35801_uid193763 Mycobacterium_tuberculosis_F11_uid58417 Mycobacterium_tuberculosis_H37Ra_uid58853 Mycobacterium_tuberculosis_H37Rv_uid170532 Mycobacterium_tuberculosis_H37Rv_uid57777 Mycobacterium_tuberculosis_Haarlem3_NITR202_uid202216 Mycobacterium_tuberculosis_Haarlem_uid54453 Mycobacterium_tuberculosis_KZN_1435_uid59069 Mycobacterium_tuberculosis_KZN_4207_uid83619 Mycobacterium_tuberculosis_KZN_605_uid54947 Mycobacterium_tuberculosis_RGTB327_uid157907 Mycobacterium_tuberculosis_RGTB423_uid162179 Mycobacterium_tuberculosis_uid185758 Mycobacterium_tuberculosis_UT205_uid162183 Mycobacterium_ulcerans_Agy99_uid62939 +NCBI_bacterial_18.bundle : Mycobacterium_vanbaalenii_PYR_1_uid58463 Mycobacterium_VKM_Ac_1815D_uid199859 Mycobacterium_yongonense_05_1390_uid189649 Mycoplasma_agalactiae_PG2_uid61619 Mycoplasma_agalactiae_uid46679 Mycoplasma_arthritidis_158L3_1_uid58005 Mycoplasma_bovis_HB0801_uid168665 Mycoplasma_bovis_Hubei_1_uid68691 Mycoplasma_bovis_PG45_uid60859 Mycoplasma_capricolum_ATCC_27343_uid58525 Mycoplasma_conjunctivae_uid59325 Mycoplasma_crocodyli_MP145_uid47087 Mycoplasma_cynos_C142_uid184824 Mycoplasma_fermentans_JER_uid53543 Mycoplasma_fermentans_M64_uid62099 Mycoplasma_fermentans_PG18_uid197154 Mycoplasma_gallisepticum_CA06_2006_052_5_2P_uid172630 Mycoplasma_gallisepticum_F_uid162001 Mycoplasma_gallisepticum_NC06_2006_080_5_2P_uid172629 Mycoplasma_gallisepticum_NC08_2008_031_4_3P_uid172631 Mycoplasma_gallisepticum_NC95_13295_2_2P_uid172625 Mycoplasma_gallisepticum_NC96_1596_4_2P_uid172626 Mycoplasma_gallisepticum_NY01_2001_047_5_1P_uid172627 Mycoplasma_gallisepticum_R_high__uid161999 Mycoplasma_gallisepticum_R_low__uid57993 Mycoplasma_gallisepticum_S6_uid200523 Mycoplasma_gallisepticum_VA94_7994_1_7P_uid172624 Mycoplasma_gallisepticum_WI01_2001_043_13_2P_uid172628 Mycoplasma_genitalium_G37_uid57707 Mycoplasma_genitalium_M2288_uid173372 Mycoplasma_genitalium_M2321_uid173373 Mycoplasma_genitalium_M6282_uid173371 Mycoplasma_genitalium_M6320_uid173370 Mycoplasma_haemocanis_Illinois_uid82367 Mycoplasma_haemofelis_Langford_1_uid62461 Mycoplasma_haemofelis_Ohio2_uid162029 Mycoplasma_hominis_ATCC_23114_uid41875 Mycoplasma_hyopneumoniae_168_L_uid205052 Mycoplasma_hyopneumoniae_168_uid162053 Mycoplasma_hyopneumoniae_232_uid58205 Mycoplasma_hyopneumoniae_7422_uid212968 Mycoplasma_hyopneumoniae_7448_uid58039 Mycoplasma_hyopneumoniae_J_uid58059 Mycoplasma_hyorhinis_DBS_1050_uid228933 Mycoplasma_hyorhinis_GDL_1_uid87003 Mycoplasma_hyorhinis_HUB_1_uid51695 Mycoplasma_hyorhinis_MCLD_uid162087 Mycoplasma_hyorhinis_SK76_uid181997 Mycoplasma_leachii_99_014_6_uid162031 Mycoplasma_leachii_PG50_uid60849 Mycoplasma_mobile_163K_uid58077 Mycoplasma_mycoides_capri_LC_95010_uid66189 Mycoplasma_mycoides_SC_Gladysdale_uid197153 Mycoplasma_mycoides_SC_PG1_uid58031 Mycoplasma_ovis_Michigan_uid232247 Mycoplasma_parvum_Indiana_uid223379 Mycoplasma_penetrans_HF_2_uid57729 Mycoplasma_pneumoniae_309_uid85495 Mycoplasma_pneumoniae_FH_uid162027 Mycoplasma_pneumoniae_M129_B7_uid185759 Mycoplasma_pneumoniae_M129_uid57709 Mycoplasma_pulmonis_UAB_CTIP_uid61569 Mycoplasma_putrefaciens_KS1_uid72481 Mycoplasma_putrefaciens_Mput9231_uid198525 Mycoplasma_suis_Illinois_uid61897 Mycoplasma_suis_KI3806_uid63665 Mycoplasma_synoviae_53_uid58061 Mycoplasma_wenyonii_Massachusetts_uid170731 Myxococcus_fulvus_HW_1_uid68443 Myxococcus_stipitatus_DSM_14675_uid186549 Myxococcus_xanthus_DK_1622_uid58003 Nakamurella_multipartita_DSM_44233_uid59221 Nanoarchaeum_equitans_Kin4_M_uid58009 Natranaerobius_thermophilus_JW_NM_WN_LF_uid59001 Natrialba_magadii_ATCC_43099_uid46245 Natrinema_J7_uid171337 Natrinema_pellirubrum_DSM_15624_uid74437 Natronobacterium_gregoryi_SP2_uid74439 Natronococcus_occultus_SP4_uid184863 Natronomonas_moolapensis_8_8_11_uid190182 Natronomonas_pharaonis_DSM_2160_uid58435 Nautilia_profundicola_AmH_uid59345 Neisseria_gonorrhoeae_FA_1090_uid57611 Neisseria_gonorrhoeae_NCCP11945_uid59191 Neisseria_gonorrhoeae_TCDC_NG08107_uid161097 Neisseria_lactamica_020_06_uid60851 Neisseria_meningitidis_053442_uid58587 Neisseria_meningitidis_8013_uid161967 Neisseria_meningitidis_alpha14_uid61649 Neisseria_meningitidis_alpha710_uid161971 Neisseria_meningitidis_FAM18_uid57825 Neisseria_meningitidis_G2136_uid162085 Neisseria_meningitidis_H44_76_uid162083 Neisseria_meningitidis_M01_240149_uid162079 Neisseria_meningitidis_M01_240355_uid162075 Neisseria_meningitidis_M04_240196_uid162081 Neisseria_meningitidis_MC58_uid57817 Neisseria_meningitidis_NZ_05_33_uid162077 Neisseria_meningitidis_WUE_2594_uid162093 Neisseria_meningitidis_Z2491_uid57819 Neorickettsia_risticii_Illinois_uid58889 Neorickettsia_sennetsu_Miyayama_uid57965 Niastella_koreensis_GR20_10_uid83125 Nitratifractor_salsuginis_DSM_16511_uid62183 Nitratiruptor_SB155_2_uid58861 Nitrobacter_hamburgensis_X14_uid58293 Nitrobacter_winogradskyi_Nb_255_uid58295 Nitrosococcus_halophilus_Nc4_uid46803 Nitrosococcus_oceani_ATCC_19707_uid58403 Nitrosococcus_watsonii_C_113_uid50331 Nitrosomonas_AL212_uid55727 Nitrosomonas_europaea_ATCC_19718_uid57647 Nitrosomonas_eutropha_C91_uid58363 Nitrosomonas_Is79A3_uid68745 Nitrosopumilus_maritimus_SCM1_uid58903 Nitrosospira_multiformis_ATCC_25196_uid58361 Nocardia_brasiliensis_ATCC_700358_uid86913 Nocardia_cyriacigeorgica_GUH_2_uid89395 Nocardia_farcinica_IFM_10152_uid58203 Nocardioides_JS614_uid58149 +NCBI_bacterial_19.bundle : Nocardiopsis_alba_ATCC_BAA_2165_uid174334 Nocardiopsis_dassonvillei_DSM_43111_uid49483 _Nostoc_azollae__0708_uid49725 Nostoc_PCC_7107_uid182932 Nostoc_PCC_7120_uid57803 Nostoc_PCC_7524_uid182933 Nostoc_punctiforme_PCC_73102_uid57767 Novosphingobium_aromaticivorans_DSM_12444_uid57747 Novosphingobium_PP1Y_uid67383 Oceanimonas_GK1_uid81627 Oceanithermus_profundus_DSM_14977_uid60855 Oceanobacillus_iheyensis_HTE831_uid57867 Ochrobactrum_anthropi_ATCC_49188_uid58921 Octadecabacter_antarcticus_307_uid54701 Octadecabacter_arcticus_238_uid54699 Odoribacter_splanchnicus_DSM_20712_uid63397 Oenococcus_oeni_PSU_1_uid59417 Oligotropha_carboxidovorans_OM4_uid162135 Oligotropha_carboxidovorans_OM5_uid59155 Oligotropha_carboxidovorans_OM5_uid72795 Olsenella_uli_DSM_7084_uid51367 Onion_yellows_phytoplasma_OY_M_uid58015 Opitutus_terrae_PB90_1_uid58965 Orientia_tsutsugamushi_Boryong_uid61621 Orientia_tsutsugamushi_Ikeda_uid58869 Ornithobacterium_rhinotracheale_DSM_15997_uid168256 Oscillatoria_acuminata_PCC_6304_uid183003 Oscillatoria_PCC_7112_uid183110 Oscillibacter_valericigenes_Sjm18_20_uid73895 Owenweeksia_hongkongensis_DSM_17368_uid82951 Paenibacillus_JDR_2_uid59021 Paenibacillus_larvae_04_309_uid232355 Paenibacillus_mucilaginosus_3016_uid89377 Paenibacillus_mucilaginosus_K02_uid162117 Paenibacillus_mucilaginosus_KNP414_uid68311 Paenibacillus_polymyxa_CR1_uid231659 Paenibacillus_polymyxa_E681_uid53477 Paenibacillus_polymyxa_M1_uid162159 Paenibacillus_polymyxa_SC2_uid59583 Paenibacillus_terrae_HPL_003_uid82371 Paenibacillus_Y412MC10_uid41127 Paludibacter_propionicigenes_WB4_uid60725 Pandoraea_pnomenusa_3kgm_uid229878 Pandoraea_RB_44_uid231151 Pantoea_ananatis_AJ13355_uid162073 Pantoea_ananatis_LMG_20103_uid46807 Pantoea_ananatis_PA13_uid162181 Pantoea_ananatis_uid86861 Pantoea_At_9b_uid55845 Pantoea_vagans_C9_1_uid49871 Parabacteroides_distasonis_ATCC_8503_uid58301 Parachlamydia_acanthamoebae_UV7_uid68335 Paracoccus_aminophilus_JCM_7686_uid214795 Paracoccus_denitrificans_PD1222_uid58187 Parvibaculum_lavamentivorans_DS_1_uid58739 Parvularcula_bermudensis_HTCC2503_uid51641 Pasteurella_multocida_3480_uid161955 Pasteurella_multocida_36950_uid86887 Pasteurella_multocida_HN06_uid156881 Pasteurella_multocida_Pm70_uid57627 Pectobacterium_atrosepticum_SCRI1043_uid57957 Pectobacterium_carotovorum_PC1_uid59295 Pectobacterium_carotovorum_PCC21_uid174335 Pectobacterium_SCC3193_uid193707 Pectobacterium_wasabiae_WPP163_uid41297 Pediococcus_claussenii_ATCC_BAA_344_uid81103 Pediococcus_pentosaceus_ATCC_25745_uid57981 Pediococcus_pentosaceus_SL4_uid227215 Pedobacter_heparinus_DSM_2366_uid59111 Pedobacter_saltans_DSM_12145_uid61349 Pelagibacterium_halotolerans_B2_uid74393 Pelobacter_carbinolicus_DSM_2380_uid58241 Pelobacter_propionicus_DSM_2379_uid58255 Pelodictyon_phaeoclathratiforme_BU_1_uid58173 Pelotomaculum_thermopropionicum_SI_uid58877 Persephonella_marina_EX_H1_uid58119 Persicivirga_dokdonensis_DSW_6_uid186842 Petrotoga_mobilis_SJ95_uid58747 Phaeobacter_gallaeciensis_DSM_17395_uid54717 Phaeobacter_gallaeciensis_DSM_26640_uid232357 Phaeobacter_gallaeciensis_uid54715 +NCBI_bacterial_20.bundle : Phenylobacterium_zucineum_HLK1_uid58959 Photobacterium_profundum_SS9_uid62923 Photorhabdus_asymbiotica_ATCC_43949_uid59243 Photorhabdus_luminescens_laumondii_TTO1_uid61593 Phycisphaera_mikurensis_NBRC_102666_uid157331 Picrophilus_torridus_DSM_9790_uid58041 Pirellula_staleyi_DSM_6068_uid43209 Planctomyces_brasiliensis_DSM_5305_uid60583 Planctomyces_limnophilus_DSM_3776_uid48643 Plautia_stali_symbiont_uid65033 Pleurocapsa_PCC_7327_uid183006 Polaribacter_MED152_uid54207 Polaromonas_JS666_uid58207 Polaromonas_naphthalenivorans_CJ2_uid58273 Polymorphum_gilvum_SL003B_26A1_uid65447 Pseudomonas_ND6_uid167583 Polynucleobacter_necessarius_asymbioticus_QLW_P1DMWA_1_uid58611 Polynucleobacter_necessarius_STIR1_uid58967 Porphyromonas_asaccharolytica_DSM_20707_uid66603 Porphyromonas_gingivalis_ATCC_33277_uid58879 Porphyromonas_gingivalis_TDC60_uid67407 Porphyromonas_gingivalis_W83_uid57641 Prevotella_dentalis_DSM_3688_uid184818 Prevotella_denticola_F0289_uid65091 Prevotella_intermedia_17_uid163151 Prevotella_melaninogenica_ATCC_25845_uid51377 Prevotella_oral_taxon_299_F0039_uid45899 Prevotella_ruminicola_23_uid47507 Prochlorococcus_marinus_AS9601_uid58307 Prochlorococcus_marinus_CCMP1375_uid57995 Prochlorococcus_marinus_MIT_9211_uid58309 Prochlorococcus_marinus_MIT_9215_uid58819 Prochlorococcus_marinus_MIT_9301_uid58437 Prochlorococcus_marinus_MIT_9303_uid58305 Prochlorococcus_marinus_MIT_9312_uid58357 Prochlorococcus_marinus_MIT_9313_uid57773 Prochlorococcus_marinus_MIT_9515_uid58313 Prochlorococcus_marinus_NATL1A_uid58423 Prochlorococcus_marinus_NATL2A_uid58359 Prochlorococcus_marinus_pastoris_CCMP1986_uid57761 Propionibacterium_acidipropionici_ATCC_4875_uid179069 Propionibacterium_acnes_266_uid162059 Propionibacterium_acnes_6609_uid162137 Propionibacterium_acnes_ATCC_11828_uid162177 Propionibacterium_acnes_C1_uid176501 Propionibacterium_acnes_HL096PA1_uid198524 Propionibacterium_acnes_KPA171202_uid58101 Propionibacterium_acnes_SK137_uid48071 Propionibacterium_acnes_TypeIA2_P_acn17_uid80735 Propionibacterium_acnes_TypeIA2_P_acn31_uid80733 Propionibacterium_acnes_TypeIA2_P_acn33_uid80745 Propionibacterium_avidum_44067_uid197361 Propionibacterium_freudenreichii_shermanii_CIRM_BIA1_uid49535 Propionibacterium_propionicum_F0230a_uid170533 Prosthecochloris_aestuarii_DSM_271_uid58151 Proteus_mirabilis_BB2000_uid214430 Proteus_mirabilis_HI4320_uid61599 Providencia_stuartii_MRSN_2154_uid162193 Pseudanabaena_PCC_7367_uid183004 Pseudoalteromonas_atlantica_T6c_uid58283 Pseudoalteromonas_haloplanktis_TAC125_uid58431 Pseudoalteromonas_SM9913_uid61247 Pseudogulbenkiania_NH8B_uid73423 Pseudomonas_aeruginosa_B136_33_uid196598 Pseudomonas_aeruginosa_c7447m_uid219358 Pseudomonas_aeruginosa_DK2_uid168996 Pseudomonas_aeruginosa_LES431_uid232245 Pseudomonas_aeruginosa_LESB58_uid59275 Pseudomonas_aeruginosa_M18_uid162089 Pseudomonas_aeruginosa_MTB_uid231150 Pseudomonas_aeruginosa_NCGM2_S1_uid162173 Pseudomonas_aeruginosa_PA1R_uid228932 Pseudomonas_aeruginosa_PA1_uid228931 Pseudomonas_aeruginosa_PA7_uid58627 Pseudomonas_aeruginosa_PAO1_uid57945 Pseudomonas_aeruginosa_PAO1_VE13_uid225027 Pseudomonas_aeruginosa_PAO1_VE2_uid225026 Pseudomonas_aeruginosa_PAO581_uid219357 Pseudomonas_aeruginosa_RP73_uid209328 Pseudomonas_aeruginosa_SCV20265_uid232358 Pseudomonas_aeruginosa_UCBPP_PA14_uid57977 Pseudomonas_brassicacearum_NFM421_uid66303 Pseudomonas_denitrificans_ATCC_13867_uid195459 Pseudomonas_entomophila_L48_uid58639 Pseudomonas_fluorescens_A506_uid165185 Pseudomonas_fluorescens_CHA0_uid203393 Pseudomonas_fluorescens_F113_uid87037 Pseudomonas_fluorescens_Pf0_1_uid57591 Pseudomonas_fluorescens_Pf_5_uid57937 +NCBI_bacterial_21.bundle : Pseudomonas_fluorescens_R124_uid182045 Pseudomonas_fluorescens_SBW25_uid158693 Pseudomonas_fulva_12_X_uid67351 Pseudomonas_mendocina_NK_01_uid66299 Pseudomonas_mendocina_ymp_uid58723 Pseudomonas_monteilii_SB3078_uid232252 Pseudomonas_monteilii_SB3101_uid232253 Pseudomonas_poae_RE_1_1_14_uid188480 Pseudomonas_putida_BIRD_1_uid162055 Pseudomonas_putida_DOT_T1E_uid171260 Pseudomonas_putida_F1_uid58355 Pseudomonas_putida_GB_1_uid58735 Pseudomonas_putida_H8234_uid208673 Pseudomonas_putida_HB3267_uid184078 Pseudomonas_putida_KT2440_uid57843 Pseudomonas_putida_NBRC_14164_uid208670 Pseudomonas_putida_S16_uid68747 Pseudomonas_putida_UW4_uid182733 Pseudomonas_putida_W619_uid58651 Pseudomonas_resinovorans_NBRC_106553_uid208671 Pseudomonas_stutzeri_A1501_uid58641 Pseudomonas_stutzeri_ATCC_17588___LMG_11199_uid68749 Pseudomonas_stutzeri_CCUG_29243_uid168379 Pseudomonas_stutzeri_DSM_10701_uid170940 Pseudomonas_stutzeri_DSM_4166_uid162113 Pseudomonas_stutzeri_RCH2_uid184342 Pseudomonas_syringae_B728a_uid57931 Pseudomonas_syringae_phaseolicola_1448A_uid58099 Pseudomonas_syringae_tomato_DC3000_uid57967 Pseudomonas_TKP_uid232248 Pseudomonas_VLB120_uid226717 Pseudonocardia_dioxanivorans_CB1190_uid65087 Pseudovibrio_FO_BEG1_uid82373 Pseudoxanthomonas_spadix_BD_a59_uid75113 Pseudoxanthomonas_suwonensis_11_1_uid62105 Psychrobacter_arcticus_273_4_uid58021 Psychrobacter_cryohalolentis_K5_uid58373 Psychrobacter_G_uid210641 Psychrobacter_PRwf_1_uid58459 Psychroflexus_torquis_ATCC_700755_uid54205 Psychromonas_CNPT3_uid54249 Psychromonas_ingrahamii_37_uid58521 Pusillimonas_T7_7_uid66391 Pyrobaculum_1860_uid82379 Pyrobaculum_aerophilum_IM2_uid57727 Pyrobaculum_arsenaticum_DSM_13514_uid58409 Pyrobaculum_calidifontis_JCM_11548_uid58787 Pyrobaculum_islandicum_DSM_4184_uid58635 Pyrobaculum_neutrophilum_V24Sta_uid58421 Pyrobaculum_oguniense_TE7_uid84411 Pyrococcus_abyssi_GE5_uid62903 Pyrococcus_furiosus_COM1_uid169620 Pyrococcus_furiosus_DSM_3638_uid57873 Pyrococcus_horikoshii_OT3_uid57753 Pyrococcus_NA2_uid66551 Pyrococcus_ST04_uid167261 Pyrococcus_yayanosii_CH1_uid68281 Pyrolobus_fumarii_1A_uid73415 Rahnella_aquatilis_CIP_78_65___ATCC_33071_uid86855 Rahnella_aquatilis_HX2_uid158049 Rahnella_Y9602_uid62715 Ralstonia_eutropha_H16_uid62925 Ralstonia_eutropha_JMP134_uid58047 Ralstonia_pickettii_12D_uid58859 Ralstonia_pickettii_12J_uid58737 Ralstonia_pickettii_DTP0602_uid222229 Ralstonia_solanacearum_CFBP2957_uid50545 Ralstonia_solanacearum_CMR15_uid227773 Ralstonia_solanacearum_FQY_4_f_uid194089 Ralstonia_solanacearum_GMI1000_uid57593 Ralstonia_solanacearum_Po82_uid162133 Ralstonia_solanacearum_PSI07_uid50539 Ralstonia_solanacearum_uid178852 Ramlibacter_tataouinensis_TTB310_uid68279 Raoultella_ornithinolytica_B6_uid198431 Renibacterium_salmoninarum_ATCC_33209_uid58899 Rhizobium_etli_bv__mimosae_Mim1_uid213896 Rhizobium_etli_CFN_42_uid58377 Rhizobium_etli_CIAT_652_uid59115 Rhizobium_IRBG74_uid222820 Rhizobium_leguminosarum_bv__trifolii_WSM1325_uid58991 Rhizobium_NGR234_uid59081 +NCBI_bacterial_22.bundle : Rhizobium_leguminosarum_bv__trifolii_WSM2304_uid58997 Rhizobium_leguminosarum_bv__viciae_3841_uid57955 Rhizobium_tropici_CIAT_899_uid185179 Rhodanobacter_2APBS1_uid74431 Rhodobacter_capsulatus_SB_1003_uid47509 Rhodobacter_sphaeroides_2_4_1_uid57653 Rhodobacter_sphaeroides_ATCC_17025_uid58451 Rhodobacter_sphaeroides_ATCC_17029_uid58449 Rhodobacter_sphaeroides_KD131_uid59277 Rhodococcus_equi_103S_uid60171 Rhodococcus_erythropolis_CCM2595_uid216088 Rhodococcus_erythropolis_PR4_uid59019 Rhodococcus_jostii_RHA1_uid58325 Rhodococcus_opacus_B4_uid13791 Rhodococcus_pyridinivorans_SB3094_uid232359 Rhodoferax_ferrireducens_T118_uid58353 Rhodomicrobium_vannielii_ATCC_17100_uid43247 Rhodopirellula_baltica_SH_1_uid61589 Rhodopseudomonas_palustris_BisA53_uid58445 Rhodopseudomonas_palustris_BisB18_uid58443 Rhodopseudomonas_palustris_BisB5_uid58441 Rhodopseudomonas_palustris_CGA009_uid62901 Rhodopseudomonas_palustris_DX_1_uid43327 Rhodopseudomonas_palustris_HaA2_uid58439 Rhodopseudomonas_palustris_TIE_1_uid58995 Rhodospirillum_centenum_SW_uid58805 Rhodospirillum_photometricum_uid159003 Rhodospirillum_rubrum_ATCC_11170_uid57655 Rhodospirillum_rubrum_F11_uid162149 Rhodothermus_marinus_DSM_4252_uid41729 Rhodothermus_marinus_SG0_5JP17_172_uid72767 Rickettsia_africae_ESF_5_uid58799 Rickettsia_akari_Hartford_uid58161 Rickettsia_australis_Cutlack_uid158039 Rickettsia_bellii_OSU_85_389_uid58681 Rickettsia_bellii_RML369_C_uid58405 Rickettsia_canadensis_CA410_uid88063 Rickettsia_canadensis_McKiel_uid58159 Rickettsia_conorii_Malish_7_uid57633 Rickettsia_felis_URRWXCal2_uid58331 Rickettsia_heilongjiangensis_054_uid70839 Rickettsia_japonica_YH_uid73963 Rickettsia_massiliae_AZT80_uid86751 Rickettsia_massiliae_MTU5_uid58801 Rickettsia_montanensis_OSU_85_930_uid158043 Rickettsia_parkeri_Portsmouth_uid158045 Rickettsia_peacockii_Rustic_uid59301 Rickettsia_philipii_364D_uid89383 Rickettsia_prowazekii_Breinl_uid196851 Rickettsia_prowazekii_BuV67_CWPP_uid158063 Rickettsia_prowazekii_Chernikova_uid158053 Rickettsia_prowazekii_Dachau_uid158057 Rickettsia_prowazekii_GvV257_uid158051 Rickettsia_prowazekii_Katsinyian_uid158055 Rickettsia_prowazekii_Madrid_E_uid61565 Rickettsia_prowazekii_NMRC_Madrid_E_uid196850 Rickettsia_prowazekii_Rp22_uid161945 Rickettsia_prowazekii_RpGvF24_uid158065 Rickettsia_rhipicephali_3_7_female6_CWPP_uid156977 Rickettsia_rickettsii_Arizona_uid86655 Rickettsia_rickettsii_Brazil_uid88069 Rickettsia_rickettsii_Colombia_uid86653 Rickettsia_rickettsii_Hauke_uid86659 Rickettsia_rickettsii_Hino_uid86657 Rickettsia_rickettsii_Hlp_2_uid88067 Rickettsia_rickettsii_Iowa_uid58961 Rickettsia_rickettsii__Sheila_Smith__uid58027 Rickettsia_slovaca_13_B_uid82369 Rickettsia_slovaca_D_CWPP_uid158159 Rickettsia_typhi_B9991CWPP_uid158357 Rickettsia_typhi_TH1527_uid158161 Rickettsia_typhi_Wilmington_uid58063 Riemerella_anatipestifer_ATCC_11845___DSM_15868_uid159857 Riemerella_anatipestifer_ATCC_11845___DSM_15868_uid60727 Riemerella_anatipestifer_RA_CH_1_uid175469 Riemerella_anatipestifer_RA_CH_2_uid186548 Rivularia_PCC_7116_uid182929 Riemerella_anatipestifer_RA_GD_uid162013 Robiginitalea_biformata_HTCC2501_uid58285 Roseburia_hominis_A2_183_uid73419 Roseburia_intestinalis_uid197164 Roseburia_intestinalis_XB6B4_uid197179 Roseiflexus_castenholzii_DSM_13941_uid58287 Roseiflexus_RS_1_uid58523 Roseobacter_denitrificans_OCh_114_uid58597 Roseobacter_litoralis_Och_149_uid54719 Rothia_dentocariosa_ATCC_17931_uid49331 Rothia_mucilaginosa_uid43093 Rubrivivax_gelatinosus_IL144_uid158163 Rubrobacter_xylanophilus_DSM_9941_uid58057 Ruegeria_pomeroyi_DSS_3_uid57863 Ruegeria_TM1040_uid58193 Ruminococcus_albus_7_uid51721 Ruminococcus_bromii_uid197158 Ruminococcus_champanellensis_18P13_uid197169 _Ruminococcus__obeum_uid197165 +NCBI_bacterial_23.bundle : _Ruminococcus__torques_uid197166 Ruminococcus_uid197156 Runella_slithyformis_DSM_19594_uid68317 Saccharomonospora_viridis_DSM_43017_uid59055 Saccharophagus_degradans_2_40_uid57921 Saccharopolyspora_erythraea_NRRL_2338_uid62947 Saccharothrix_espanaensis_DSM_44229_uid184826 Salinarchaeum_laminariae_Harcht_Bsk1_uid207001 Salinibacter_ruber_DSM_13855_uid58513 Salinibacter_ruber_M8_uid47323 Salinispora_arenicola_CNS_205_uid58659 Salinispora_tropica_CNB_440_uid58565 Salmonella_bongori_NCTC_12419_uid70155 Salmonella_bongori_Sbon_167_uid213088 Salmonella_enterica_arizonae_serovar_62_z4_z23__uid58191 Salmonella_enterica_serovar_4_5_12_i__08_1736_uid212969 Salmonella_enterica_serovar_Agona_24249_uid230614 Salmonella_enterica_serovar_Agona_SL483_uid59431 Salmonella_enterica_serovar_Bareilly_CFSAN000189_uid212971 Salmonella_enterica_serovar_Bovismorbificans_3114_uid218006 Salmonella_enterica_serovar_Choleraesuis_SC_B67_uid58017 Salmonella_enterica_Serovar_Cubana_CFSAN002050_uid212973 Salmonella_enterica_serovar_Dublin_CT_02021853_uid58917 Salmonella_enterica_serovar_Enteritidis_P125109_uid59247 Salmonella_enterica_serovar_Gallinarum_287_91_uid59249 Salmonella_enterica_serovar_Gallinarum_Pullorum_CDC1983_67_uid217770 Salmonella_enterica_serovar_Gallinarum_pullorum_RKS5078_uid87035 Salmonella_enterica_serovar_Heidelberg_41578_uid212970 Salmonella_enterica_serovar_Heidelberg_B182_uid162195 Salmonella_enterica_Serovar_Heidelberg_CFSAN002069_uid212974 Salmonella_enterica_serovar_Heidelberg_SL476_uid58973 Salmonella_enterica_serovar_Javiana_CFSAN001992_uid190101 Salmonella_enterica_serovar_Newport_SL254_uid58831 Salmonella_enterica_serovar_Newport_USMARC_S3124_1_uid213895 Salmonella_enterica_serovar_Paratyphi_A_AKU_12601_uid59269 Salmonella_enterica_serovar_Paratyphi_A_ATCC_9150_uid58201 Salmonella_enterica_serovar_Paratyphi_B_SPB7_uid59097 Salmonella_enterica_serovar_Paratyphi_C_RKS4594_uid59063 Salmonella_enterica_serovar_Pullorum_S06004_uid214431 Salmonella_enterica_serovar_Schwarzengrund_CVM19633_uid58915 Salmonella_enterica_serovar_Thompson_RM6836_uid222802 Salmonella_enterica_serovar_Typhi_CT18_uid57793 Salmonella_enterica_serovar_Typhimurium_14028S_uid86059 Salmonella_enterica_serovar_Typhimurium_798_uid158047 Salmonella_enterica_serovar_Typhimurium_D23580_uid86061 Salmonella_enterica_serovar_Typhimurium_DT2_uid222818 Salmonella_enterica_serovar_Typhimurium_LT2_uid57799 Salmonella_enterica_serovar_Typhimurium_SL1344_uid86645 Salmonella_enterica_serovar_Typhimurium_ST4_74_uid84393 Salmonella_enterica_serovar_Typhimurium_T000240_uid84397 Salmonella_enterica_serovar_Typhimurium_U288_uid198746 Salmonella_enterica_serovar_Typhimurium_UK_1_uid87049 Salmonella_enterica_Serovar_Typhimurium_var__5__CFSAN001921_uid212972 Salmonella_enterica_serovar_Typhi_P_stx_12_uid87001 Salmonella_enterica_serovar_Typhi_Ty21a_uid201427 Salmonella_enterica_serovar_Typhi_Ty2_uid57973 Salmonella_enterica_serovar_Weltevreden_2007_60_3289_1_uid178014 Salmonella_typhimurium_DT104_uid223287 Sanguibacter_keddieii_DSM_10542_uid40845 Saprospira_grandis_Lewin_uid89375 Sebaldella_termitidis_ATCC_33386_uid41865 secondary_endosymbiont_of_Ctenarytaina_eucalypti_uid172737 secondary_endosymbiont_of_Heteropsylla_cubana_Thao2000_uid172738 Segniliparus_rotundus_DSM_44985_uid49049 Selenomonas_ruminantium_lactilytica_TAM6421_uid157247 Selenomonas_sputigena_ATCC_35185_uid55329 Serratia_AS12_uid67315 Serratia_AS13_uid162065 Serratia_ATCC_39006_uid218470 Serratia_liquefaciens_ATCC_27592_uid212306 Serratia_marcescens_FGI94_uid185180 Serratia_marcescens_WW4_uid188478 Serratia_odorifera_4Rx13_uid42253 Serratia_plymuthica_AS9_uid67313 Serratia_plymuthica_S13_uid210642 Serratia_proteamaculans_568_uid58725 Serratia_symbiotica__Cinara_cedri__uid82363 Shewanella_amazonensis_SB2B_uid58257 +NCBI_bacterial_24.bundle : Shewanella_ANA_3_uid58347 Shewanella_baltica_BA175_uid52601 Shewanella_baltica_OS117_uid162025 Shewanella_baltica_OS155_uid58259 Shewanella_baltica_OS185_uid58743 Shewanella_baltica_OS195_uid58261 Shewanella_baltica_OS223_uid58775 Shewanella_baltica_OS678_uid50553 Shewanella_denitrificans_OS217_uid58263 Shewanella_frigidimarina_NCIMB_400_uid58265 Shewanella_halifaxensis_HAW_EB4_uid59007 Shewanella_loihica_PV_4_uid58349 Shewanella_MR_4_uid58345 Shewanella_MR_7_uid58343 Shewanella_oneidensis_MR_1_uid57949 Shewanella_pealeana_ATCC_700345_uid58705 Shewanella_piezotolerans_WP3_uid58745 Shewanella_putrefaciens_200_uid161927 Shewanella_putrefaciens_CN_32_uid58267 Shewanella_sediminis_HAW_EB3_uid58835 Shewanella_violacea_DSS12_uid47085 Shewanella_W3_18_1_uid58341 Shewanella_woodyi_ATCC_51908_uid58721 Shigella_boydii_CDC_3083_94_uid58415 Shigella_boydii_Sb227_uid58215 Shigella_dysenteriae_1617_uid229875 Shigella_dysenteriae_Sd197_uid58213 Shigella_flexneri_2002017_uid159233 Shigella_flexneri_2a_2457T_uid57991 Shigella_flexneri_2a_301_uid62907 Shigella_flexneri_5_8401_uid58583 Shigella_sonnei_53G_uid84383 Shigella_sonnei_Ss046_uid58217 Sideroxydans_lithotrophicus_ES_1_uid46801 Simiduia_agarivorans_SA1_uid177713 Simkania_negevensis_Z_uid68451 Singulisphaera_acidiphila_DSM_18658_uid81777 Sinorhizobium_fredii_HH103_uid86865 Sinorhizobium_fredii_USDA_257_uid168059 Sinorhizobium_medicae_WSM419_uid58549 Sinorhizobium_meliloti_1021_uid57603 Sinorhizobium_meliloti_2011_uid193772 Sinorhizobium_meliloti_AK83_uid52607 Sinorhizobium_meliloti_BL225C_uid52605 Sinorhizobium_meliloti_GR4_uid184823 Sinorhizobium_meliloti_Rm41_uid176372 Sinorhizobium_meliloti_SM11_uid159685 Sphingobacterium_21_uid64755 Slackia_heliotrinireducens_DSM_20476_uid59051 Sodalis_glossinidius__morsitans__uid58553 Solibacillus_silvestris_StLB046_uid168516 Solitalea_canadensis_DSM_3403_uid81783 Sorangium_cellulosum_So0157_2_uid210741 Sorangium_cellulosum__So_ce_56__uid61629 Sphaerobacter_thermophilus_DSM_20745_uid41997 Sphaerochaeta_pleomorpha_Grapes_uid82365 Sphingobium_chlorophenolicum_L_1_uid52597 Sphingobium_japonicum_UT26S_uid47077 Sphingobium_SYK_6_uid73353 Sphingomonas_MM_1_uid193771 Sphingomonas_wittichii_RW1_uid58691 Sphingopyxis_alaskensis_RB2256_uid58351 Spiribacter_UAH_SP71_uid226111 Spirochaeta_africana_DSM_8902_uid81779 Spirochaeta_Buddy_uid63633 Spirochaeta_caldaria_DSM_7334_uid68753 Spirochaeta_coccoides_DSM_17374_uid66331 Spirochaeta_L21_RPul_D2_uid231658 Spirochaeta_smaragdinae_DSM_11293_uid51369 Spirochaeta_thermophila_DSM_6192_uid53037 Spirochaeta_thermophila_DSM_6578_uid162041 Spiroplasma_apis_B31_uid230613 Spiroplasma_chrysopicola_DF_1_uid205053 +NCBI_bacterial_25.bundle : Spiroplasma_diminutum_CUAS_1_uid212976 Spiroplasma_syrphidicola_EA_1_uid205054 Spiroplasma_taiwanense_CT_1_uid212975 Spirosoma_linguale_DSM_74_uid43413 Stackebrandtia_nassauensis_DSM_44728_uid46663 Stanieria_cyanosphaera_PCC_7437_uid183115 Staphylococcus_aureus_04_02981_uid161969 Staphylococcus_aureus_08BA02176_uid175257 Staphylococcus_aureus_11819_97_uid159981 Staphylococcus_aureus_55_2053_uid55909 Staphylococcus_aureus_6850_uid217772 Staphylococcus_aureus_71193_uid162141 Staphylococcus_aureus_Bmb9393_uid210640 Staphylococcus_aureus_CC45_uid209174 Staphylococcus_aureus_CN1_uid217769 Staphylococcus_aureus_COL_uid57797 Staphylococcus_aureus_ECT_R_2_uid159389 Staphylococcus_aureus_ED133_uid159689 Staphylococcus_aureus_ED98_uid41455 Staphylococcus_aureus_HO_5096_0412_uid162163 Staphylococcus_aureus_JH1_uid58457 Staphylococcus_aureus_JH9_uid58455 Staphylococcus_aureus_JKD6008_uid159855 Staphylococcus_aureus_JKD6159_uid159691 Staphylococcus_aureus_LGA251_uid159391 Staphylococcus_aureus_M013_uid88065 Staphylococcus_aureus_M1_uid197263 Staphylococcus_aureus_MRSA252_uid57839 Staphylococcus_aureus_MSHR1132_uid89393 Staphylococcus_aureus_MSSA476_uid57841 Staphylococcus_aureus_Mu3_uid58817 Staphylococcus_aureus_Mu50_uid57835 Staphylococcus_aureus_MW2_uid57903 Staphylococcus_aureus_N315_uid57837 Staphylococcus_aureus_NCTC_8325_uid57795 Staphylococcus_aureus_Newman_uid58839 Staphylococcus_aureus_RF122_uid57661 Staphylococcus_aureus_SA40_uid221289 Staphylococcus_aureus_SA957_uid221288 Staphylococcus_aureus_ST228_10388_uid193754 Staphylococcus_aureus_ST228_10497_uid193755 Staphylococcus_aureus_ST228_15532_uid193756 Staphylococcus_aureus_ST228_16035_uid193757 Staphylococcus_aureus_ST228_18412_uid193760 Staphylococcus_aureus_ST228_18583_uid193761 Staphylococcus_aureus_ST398_uid159247 Staphylococcus_aureus_T0131_uid159861 Staphylococcus_aureus_TCH60_uid159859 Staphylococcus_aureus_TW20_uid159241 Staphylococcus_aureus_uid193758 Staphylococcus_aureus_uid193759 Staphylococcus_aureus_USA300_FPR3757_uid58555 Staphylococcus_aureus_USA300_TCH1516_uid58925 Staphylococcus_aureus_VC40_uid88071 Staphylococcus_aureus_Z172_uid225604 Staphylococcus_carnosus_TM300_uid59401 Staphylococcus_epidermidis_ATCC_12228_uid57861 Staphylococcus_epidermidis_RP62A_uid57663 Staphylococcus_haemolyticus_JCSC1435_uid62919 Staphylococcus_lugdunensis_HKU09_01_uid46233 Staphylococcus_lugdunensis_N920143_uid162143 Staphylococcus_pasteuri_SP1_uid226267 Staphylococcus_pseudintermedius_ED99_uid162109 Staphylococcus_pseudintermedius_HKU10_03_uid62125 Staphylococcus_saprophyticus_ATCC_15305_uid58411 Staphylococcus_warneri_SG1_uid187059 Staphylothermus_hellenicus_DSM_12710_uid45893 Staphylothermus_marinus_F1_uid58719 Starkeya_novella_DSM_506_uid48815 Stenotrophomonas_maltophilia_D457_uid162199 Stenotrophomonas_maltophilia_JV3_uid72473 Stenotrophomonas_maltophilia_K279a_uid61647 Stenotrophomonas_maltophilia_R551_3_uid58657 Stigmatella_aurantiaca_DW4_3_1_uid158509 Strawberry_lethal_yellows_phytoplasma__CPA__NZSb11_uid203392 Streptobacillus_moniliformis_DSM_12112_uid41863 Streptococcus_agalactiae_09mas018883_uid208674 Streptococcus_agalactiae_2_22_uid202215 Streptococcus_agalactiae_2603V_R_uid57943 Streptococcus_agalactiae_A909_uid57935 Streptococcus_agalactiae_GD201008_001_uid175780 Streptococcus_agalactiae_ILRI005_uid208676 Streptococcus_agalactiae_ILRI112_uid208675 Streptococcus_agalactiae_NEM316_uid61585 Streptococcus_agalactiae_SA20_06_uid178722 Streptococcus_anginosus_C1051_uid218003 Streptococcus_anginosus_C238_uid218004 Streptococcus_constellatus_pharyngis_C1050_uid218002 Streptococcus_constellatus_pharyngis_C232_uid217998 Streptococcus_constellatus_pharyngis_C818_uid218001 Streptococcus_dysgalactiae_equisimilis_167_uid222822 Streptococcus_dysgalactiae_equisimilis_AC_2713_uid178644 Streptococcus_dysgalactiae_equisimilis_ATCC_12394_uid161979 Streptococcus_dysgalactiae_equisimilis_GGS_124_uid59103 Streptococcus_dysgalactiae_equisimilis_RE378_uid176684 Streptococcus_equi_4047_uid59259 Streptococcus_equi_zooepidemicus_ATCC_35246_uid162155 Streptococcus_equi_zooepidemicus_MGCS10565_uid59263 Streptococcus_equi_zooepidemicus_uid59261 Streptococcus_gallolyticus_ATCC_43143_uid162103 Streptococcus_gallolyticus_ATCC_BAA_2069_uid63617 Streptococcus_gallolyticus_UCN34_uid46061 Streptococcus_gordonii_Challis_substr__CH1_uid57667 Streptococcus_I_G2_uid224251 Streptococcus_infantarius_CJ18_uid87033 Streptococcus_iniae_SF1_uid206041 Streptococcus_intermedius_B196_uid218000 Streptococcus_intermedius_C270_uid217999 Streptococcus_intermedius_JTH08_uid168614 Streptococcus_I_P16_uid224252 Streptococcus_lutetiensis_033_uid213397 Streptococcus_macedonicus_ACA_DC_198_uid81631 Streptococcus_mitis_B6_uid46097 Streptococcus_mutans_GS_5_uid169223 Streptococcus_mutans_LJ23_uid162197 Streptococcus_mutans_NN2025_uid46353 Streptococcus_mutans_UA159_uid57947 Streptococcus_oligofermentans_AS_1_3089_uid201429 Streptococcus_oralis_Uo5_uid65449 Streptococcus_parasanguinis_ATCC_15912_uid49313 Streptococcus_parasanguinis_FW213_uid163997 Streptococcus_parauberis_KCTC_11537_uid67355 Streptococcus_pasteurianus_ATCC_43144_uid68019 Streptococcus_pneumoniae_670_6B_uid52533 Streptococcus_pneumoniae_70585_uid59125 Streptococcus_pneumoniae_A026_uid226114 Streptococcus_pneumoniae_AP200_uid52453 Streptococcus_pneumoniae_ATCC_700669_uid59287 +NCBI_bacterial_26.bundle : Streptococcus_pneumoniae_CGSP14_uid59181 Streptococcus_pneumoniae_D39_uid58581 Streptococcus_pneumoniae_G54_uid59167 Streptococcus_pneumoniae_gamPNI0373_uid175861 Streptococcus_pneumoniae_Hungary19A_6_uid59117 Streptococcus_pneumoniae_INV104_uid162039 Streptococcus_pneumoniae_INV200_uid162035 Streptococcus_pneumoniae_JJA_uid59121 Streptococcus_pneumoniae_OXC141_uid162037 Streptococcus_pneumoniae_P1031_uid59123 Streptococcus_pneumoniae_R6_uid57859 Streptococcus_pneumoniae_SPN032672_uid197189 Streptococcus_pneumoniae_SPN033038_uid197190 Streptococcus_pneumoniae_SPN034156_uid197185 Streptococcus_pneumoniae_SPN034183_uid197186 Streptococcus_pneumoniae_SPN994038_uid197187 Streptococcus_pneumoniae_SPN994039_uid197188 Streptococcus_pneumoniae_SPNA45_uid174986 Streptococcus_pneumoniae_ST556_uid162191 Streptococcus_pneumoniae_Taiwan19F_14_uid59119 Streptococcus_pneumoniae_TCH8431_19A_uid49735 Streptococcus_pneumoniae_TIGR4_uid57857 Streptococcus_pseudopneumoniae_IS7493_uid71153 Streptococcus_pyogenes_A20_uid178106 Streptococcus_pyogenes_Alab49_uid162171 Streptococcus_pyogenes_HSC5_uid212978 Streptococcus_pyogenes_M1_476_uid193766 Streptococcus_pyogenes_M1_GAS_uid57845 Streptococcus_pyogenes_Manfredo_uid57847 Streptococcus_pyogenes_MGAS10270_uid58571 Streptococcus_pyogenes_MGAS10394_uid58105 Streptococcus_pyogenes_MGAS10750_uid58575 Streptococcus_pyogenes_MGAS15252_uid158037 Streptococcus_pyogenes_MGAS1882_uid158061 Streptococcus_pyogenes_MGAS2096_uid58573 Streptococcus_pyogenes_MGAS315_uid57911 Streptococcus_pyogenes_MGAS5005_uid58337 Streptococcus_pyogenes_MGAS6180_uid58335 Streptococcus_pyogenes_MGAS8232_uid57871 Streptococcus_pyogenes_MGAS9429_uid58569 Streptococcus_pyogenes_NZ131_uid59035 Streptococcus_pyogenes_SSI_1_uid57895 Streptococcus_salivarius_57_I_uid162151 Streptococcus_salivarius_CCHSS3_uid70481 Streptococcus_salivarius_JIM8777_uid162145 Streptococcus_sanguinis_SK36_uid58381 Streptococcus_suis_05ZYH33_uid58663 Streptococcus_suis_98HAH33_uid58665 Streptococcus_suis_A7_uid162111 Streptococcus_suis_BM407_uid59321 Streptococcus_suis_D12_uid162127 Streptococcus_suis_D9_uid162125 Streptococcus_suis_GZ1_uid161937 Streptococcus_suis_JS14_uid162095 Streptococcus_suis_P1_7_uid32235 Streptococcus_suis_S735_uid174333 Streptococcus_suis_SC070731_uid193769 Streptococcus_suis_SC84_uid59323 Streptococcus_suis_SS12_uid162123 Streptococcus_suis_ST1_uid167482 Streptococcus_suis_ST3_uid66327 Streptococcus_suis_T15_uid226112 Streptococcus_suis_TL13_uid203123 Streptococcus_suis_YB51_uid222230 Streptococcus_thermophilus_CNRZ1066_uid58221 Streptococcus_thermophilus_JIM_8232_uid162157 Streptococcus_thermophilus_LMD_9_uid58327 Streptococcus_thermophilus_LMG_18311_uid58219 Streptococcus_thermophilus_MN_ZLW_002_uid166827 Streptococcus_thermophilus_ND03_uid162015 Streptococcus_uberis_0140J_uid57959 Streptomyces_albus_J1074_uid196849 Streptomyces_avermitilis_MA_4680_uid57739 Streptomyces_bingchenggensis_BCW_1_uid82931 Streptomyces_cattleya_NRRL_8057___DSM_46488_uid162187 Streptomyces_cattleya_NRRL_8057_uid77117 Streptomyces_coelicolor_A3_2__uid57801 Streptomyces_collinus_Tu_365_uid214429 Streptomyces_davawensis_JCM_4913_uid193657 Streptomyces_flavogriseus_ATCC_33331_uid40839 Streptomyces_fulvissimus_DSM_40593_uid201038 Streptomyces_griseus_NBRC_13350_uid58983 Streptomyces_hygroscopicus_jinggangensis_5008_uid89409 Streptomyces_hygroscopicus_jinggangensis_TL01_uid189753 Streptomyces_PAMC26508_uid197217 Streptomyces_rapamycinicus_NRRL_5491_uid227224 Streptomyces_scabiei_87_22_uid46531 Streptomyces_SirexAA_E_uid72627 Streptomyces_venezuelae_ATCC_10712_uid177080 Streptomyces_violaceusniger_Tu_4113_uid52609 Streptosporangium_roseum_DSM_43021_uid42521 Sulfobacillus_acidophilus_DSM_10332_uid88061 Sulfobacillus_acidophilus_TPY_uid68841 Sulfolobus_acidocaldarius_DSM_639_uid58379 Sulfolobus_acidocaldarius_N8_uid189027 Sulfolobus_acidocaldarius_Ron12_I_uid189028 Sulfolobus_acidocaldarius_SUSAZ_uid232254 Sulfolobus_islandicus_HVE10_4_uid162067 Sulfolobus_islandicus_LAL14_1_uid197216 Sulfolobus_islandicus_L_D_8_5_uid43679 Sulfolobus_islandicus_L_S_2_15_uid58871 Sulfolobus_islandicus_M_14_25_uid58849 +NCBI_bacterial_27.bundle : Sulfolobus_islandicus_M_16_27_uid58851 Sulfolobus_islandicus_M_16_4_uid58841 Sulfolobus_islandicus_REY15A_uid162071 Sulfolobus_islandicus_Y_G_57_14_uid58923 Sulfolobus_islandicus_Y_N_15_51_uid58825 Sulfolobus_solfataricus_98_2_uid167998 Sulfolobus_solfataricus_P2_uid57721 Sulfolobus_tokodaii_7_uid57807 Sulfuricella_denitrificans_skB26_uid170240 Sulfuricurvum_kujiense_DSM_16994_uid60789 Sulfurihydrogenibium_azorense_Az_Fu1_uid58121 Sulfurihydrogenibium_YO3AOP1_uid58855 Sulfurimonas_autotrophica_DSM_16294_uid53043 Sulfurimonas_denitrificans_DSM_1251_uid58185 Sulfurospirillum_barnesii_SES_3_uid168117 Sulfurospirillum_deleyianum_DSM_6946_uid41861 Sulfurovum_NBC37_1_uid58863 Symbiobacterium_thermophilum_IAM_14863_uid58165 syncytium_symbiont_of_Diaphorina_citri_uid213384 Synechococcus_CC9311_uid58123 Synechococcus_CC9605_uid58319 Synechococcus_CC9902_uid58323 Synechococcus_elongatus_PCC_6301_uid58235 Synechococcus_elongatus_PCC_7942_uid58045 Synechococcus_JA_2_3B_a_2_13__uid58537 Synechococcus_JA_3_3Ab_uid58535 Synechococcus_PCC_6312_uid182934 Synechococcus_PCC_7002_uid59137 Synechococcus_PCC_7502_uid183008 Synechococcus_RCC307_uid61609 Synechococcus_WH_7803_uid61607 Synechococcus_WH_8102_uid61581 Synechocystis_PCC_6803_substr__GT_I_uid157913 Synechocystis_PCC_6803_substr__GT_I_uid158059 Synechocystis_PCC_6803_substr__PCC_N_uid159835 Synechocystis_PCC_6803_uid159873 Synechocystis_PCC_6803_uid189748 Synechocystis_PCC_6803_uid57659 Synergistetes_bacterium_SGP1_uid197182 Syntrophobacter_fumaroxidans_MPOB_uid58177 Syntrophobotulus_glycolicus_DSM_8271_uid63343 Syntrophomonas_wolfei_Goettingen_uid58179 Syntrophothermus_lipocalidus_DSM_12680_uid49527 Syntrophus_aciditrophicus_SB_uid58539 Tannerella_forsythia_ATCC_43037_uid83157 Taylorella_asinigenitalis_14_45_uid197194 Taylorella_asinigenitalis_MCE3_uid73771 Taylorella_equigenitalis_14_56_uid197193 Taylorella_equigenitalis_ATCC_35865_uid170255 Taylorella_equigenitalis_MCE9_uid62103 Tepidanaerobacter_acetatoxydans_Re1_uid184827 Tepidanaerobacter_Re1_uid66873 Teredinibacter_turnerae_T7901_uid59267 Terriglobus_roseus_DSM_18391_uid168183 Terriglobus_saanensis_SP1PR4_uid53251 Tetragenococcus_halophilus_uid74441 Thalassobaculum_L2_uid182483 Thalassolituus_oleivorans_MIL_1_uid195604 Thauera_MZ1T_uid58987 Thermacetogenium_phaeum_DSM_12270_uid177811 Thermaerobacter_marianensis_DSM_12885_uid61727 Thermanaerovibrio_acidaminovorans_DSM_6589_uid41925 Thermincola_potens_JR_uid48823 Thermoanaerobacter_brockii_finnii_Ako_1_uid55639 Thermoanaerobacter_italicus_Ab9_uid46241 Thermoanaerobacterium_thermosaccharolyticum_DSM_571_uid51639 Thermoanaerobacterium_thermosaccharolyticum_M0795_uid184821 Thermoanaerobacterium_xylanolyticum_LX_11_uid63163 Thermoanaerobacter_mathranii_A3_uid49481 Thermoanaerobacter_pseudethanolicus_ATCC_33223_uid58339 Thermoanaerobacter_tengcongensis_MB4_uid57813 Thermoanaerobacter_wiegelii_Rt8_B1_uid52581 Thermoanaerobacter_X513_uid53065 Thermoanaerobacter_X514_uid58589 Thermobacillus_composti_KWC4_uid74021 Thermobaculum_terrenum_ATCC_BAA_798_uid42011 Thermobifida_fusca_YX_uid57703 Thermobispora_bispora_DSM_43833_uid48999 Thermococcus_4557_uid70841 Thermococcus_AM4_uid54735 Thermococcus_barophilus_MP_uid54733 Thermococcus_CL1_uid168259 Thermococcus_gammatolerans_EJ3_uid59389 Thermococcus_kodakarensis_KOD1_uid58225 Thermococcus_litoralis_DSM_5473_uid82997 Thermococcus_onnurineus_NA1_uid59043 Thermococcus_sibiricus_MM_739_uid59399 Thermocrinis_albus_DSM_14484_uid46231 Thermodesulfatator_indicus_DSM_15286_uid68285 Thermodesulfobacterium_OPB45_uid68283 Thermodesulfobium_narugense_DSM_14796_uid66601 Thermodesulfovibrio_yellowstonii_DSM_11347_uid59257 Thermofilum_1910b_uid215374 Thermofilum_pendens_Hrk_5_uid58563 Thermogladius_1633_uid167488 Thermomicrobium_roseum_DSM_5159_uid59341 Thermomonospora_curvata_DSM_43183_uid41885 Thermoplasma_acidophilum_DSM_1728_uid61573 Thermoplasmatales_archaeon_BRNA1_uid195930 Thermoplasma_volcanium_GSS1_uid57751 Thermoproteus_tenax_Kra_1_uid74443 Thermoproteus_uzoniensis_768_20_uid65089 Thermosediminibacter_oceani_DSM_16646_uid51421 Thermosipho_africanus_TCF52B_uid59095 Thermosipho_melanesiensis_BI429_uid58683 Thermosphaera_aggregans_DSM_11486_uid48993 Thermosynechococcus_elongatus_BP_1_uid57907 Thermosynechococcus_NK55_uid231517 Thermotoga_elfii_NBRC_107921_uid227422 Thermotoga_hypogea_NBRC_106472_uid227423 Thermotoga_lettingae_TMO_uid58419 Thermotoga_maritima_MSB8_uid179902 Thermotoga_maritima_MSB8_uid202924 Thermotoga_maritima_MSB8_uid57723 Thermotoga_naphthophila_RKU_10_uid42777 Thermotoga_neapolitana_DSM_4359_uid59065 Thermotoga_petrophila_RKU_1_uid58655 Thermotoga_RQ2_uid58935 Thermotoga_thermarum_DSM_5069_uid68449 Thermovibrio_ammonificans_HB_1_uid62095 Thermovirga_lienii_DSM_17291_uid77129 Thermus_CCB_US3_UF1_uid81197 Thermus_oshimai_JL_2_uid178948 Thermus_scotoductus_SA_01_uid62273 +NCBI_bacterial_28.bundle : Thermus_thermophilus_HB27_uid58033 Thermus_thermophilus_HB8_uid58223 Thermus_thermophilus_JL_18_uid162129 Thermus_thermophilus_SG0_5JP17_16_uid159537 Thioalkalimicrobium_cyclicum_ALM1_uid67391 Thioalkalivibrio_K90mix_uid46181 Thioalkalivibrio_nitratireducens_DSM_14787_uid184011 Thioalkalivibrio_sulfidophilus_HL_EbGr7_uid59179 Thiobacillus_denitrificans_ATCC_25259_uid58189 Thiocystis_violascens_DSM_198_uid74025 Thioflavicoccus_mobilis_8321_uid184343 Thiomicrospira_crunogena_XCL_2_uid58183 Thiomonas_3As_uid178369 Thiomonas_intermedia_K12_uid48825 Tistrella_mobilis_KA081020_065_uid167486 Tolumonas_auensis_DSM_9187_uid59395 Treponema_azotonutricium_ZAS_9_uid67365 Treponema_brennaborense_DSM_12168_uid66607 Treponema_denticola_ATCC_35405_uid57583 Treponema_pallidum_Chicago_uid159543 Treponema_pallidum_DAL_1_uid87065 Treponema_pallidum_Fribourg_Blanc_uid201428 Treponema_pallidum_Mexico_A_uid176920 Treponema_pallidum_Nichols_uid208669 Treponema_pallidum_Nichols_uid57585 Treponema_pallidum_pertenue_CDC2_uid87051 Treponema_pallidum_pertenue_Gauthier_uid87067 Treponema_pallidum_pertenue_SamoaD_uid87069 Treponema_pallidum_SS14_uid58977 Treponema_paraluiscuniculi_Cuniculi_A_uid68447 Treponema_pedis_T_A4_uid215715 Treponema_primitia_ZAS_2_uid67367 Treponema_succinifaciens_DSM_2489_uid65781 Trichodesmium_erythraeum_IMS101_uid57925 Tropheryma_whipplei_TW08_27_uid57961 Tropheryma_whipplei_Twist_uid57705 Truepera_radiovictrix_DSM_17093_uid49533 Tsukamurella_paurometabola_DSM_20162_uid48829 Turneriella_parva_DSM_21527_uid168321 uncultured_Sulfuricurvum_RIFRC_1_uid193658 uncultured_Termite_group_1_bacterium_phylotype_Rs_D17_uid59059 Ureaplasma_parvum_serovar_3_ATCC_27815_uid58887 Ureaplasma_parvum_serovar_3_ATCC_700970_uid57711 Ureaplasma_urealyticum_serovar_10_ATCC_33699_uid59011 Variovorax_paradoxus_B4_uid218005 Variovorax_paradoxus_EPS_uid62107 Variovorax_paradoxus_S110_uid59437 Veillonella_parvula_DSM_2008_uid41927 Verminephrobacter_eiseniae_EF01_2_uid58675 Verrucosispora_maris_AB_18_032_uid66297 Vibrio_alginolyticus_NBRC_15630___ATCC_17749_uid199933 Vibrio_anguillarum_775_uid68057 Vibrio_cholerae_IEC224_uid89389 Vibrio_cholerae_LMA3984_4_uid159541 Vibrio_cholerae_M66_2_uid59355 Vibrio_cholerae_MJ_1236_uid59387 Vibrio_cholerae_O1_2010EL_1786_uid78933 Vibrio_cholerae_O1_biovar_El_Tor_N16961_uid57623 Vibrio_cholerae_O395_uid159869 Vibrio_cholerae_O395_uid58425 Vibrio_EJY3_uid83161 Vibrio_Ex25_uid41601 Vibrio_fischeri_ES114_uid58163 Vibrio_fischeri_MJ11_uid58907 Vibrio_furnissii_NCTC_11218_uid82347 Vibrio_harveyi_ATCC_BAA_1116_uid218471 Vibrio_harveyi_ATCC_BAA_1116_uid58957 Vibrio_nigripulchritudo_SnF1_uid222819 Vibrio_parahaemolyticus_BB22OP_uid184822 Vibrio_parahaemolyticus_O1_K33_CDC_K4557_uid212977 Vibrio_parahaemolyticus_RIMD_2210633_uid57969 Vibrio_splendidus_LGP32_uid59353 Vibrio_vulnificus_CMCP6_uid62909 Vibrio_vulnificus_MO6_24_O_uid62243 Vibrio_vulnificus_YJ016_uid58007 Wolbachia_wRi_uid59371 Vulcanisaeta_distributa_DSM_14429_uid52827 Vulcanisaeta_moutnovskia_768_28_uid63631 Waddlia_chondrophila_WSU_86_1044_uid49531 Weeksella_virosa_DSM_16922_uid63627 Weissella_koreensis_KACC_15510_uid68837 Wigglesworthia_glossinidia_endosymbiont_of_Glossina_brevipalpis_uid57853 Wigglesworthia_glossinidia_endosymbiont_of_Glossina_morsitans__Yale_colony__uid88075 Wolbachia_endosymbiont_of_Culex_quinquefasciatus_Pel_uid61645 Wolbachia_endosymbiont_of_Drosophila_melanogaster_uid57851 Wolbachia_endosymbiont_of_Drosophila_simulans_wHa_uid198768 Wolbachia_endosymbiont_of_Drosophila_simulans_wNo_uid198767 Wolbachia_endosymbiont_of_Onchocerca_ochengi_uid171829 Wolbachia_endosymbiont_TRS_of_Brugia_malayi_uid58107 Wolinella_succinogenes_DSM_1740_uid61591 Xanthobacter_autotrophicus_Py2_uid58453 Xanthomonas_albilineans_GPE_PC73_uid43163 Xanthomonas_axonopodis_citri_306_uid57889 Xanthomonas_axonopodis_citrumelo_F1_uid73179 Xanthomonas_axonopodis_Xac29_1_uid193774 Xanthomonas_campestris_8004_uid57595 Xanthomonas_campestris_ATCC_33913_uid57887 Xanthomonas_campestris_raphani_756C_uid159539 +NCBI_bacterial_29.bundle : Xanthomonas_campestris_uid61643 Xanthomonas_campestris_vesicatoria_85_10_uid58321 Xanthomonas_citri_Aw12879_uid194444 Xanthomonas_fuscans_4834_R_uid222814 Xanthomonas_oryzae_KACC_10331_uid58155 Xanthomonas_oryzae_MAFF_311018_uid58547 Xanthomonas_oryzae_oryzicola_BLS256_uid54411 Xanthomonas_oryzae_PXO99A_uid59131 Xenorhabdus_bovienii_SS_2004_uid46345 Xenorhabdus_nematophila_ATCC_19061_uid49133 Xylanimonas_cellulosilytica_DSM_15894_uid41935 Xylella_fastidiosa_9a5c_uid57849 Xylella_fastidiosa_GB514_uid162023 Xylella_fastidiosa_M12_uid58763 Xylella_fastidiosa_M23_uid58809 Xylella_fastidiosa_Temecula1_uid57869 Yersinia_enterocolitica_8081_uid57741 Yersinia_enterocolitica_palearctica_105_5R_r__uid63663 Yersinia_enterocolitica_palearctica_Y11_uid162069 Yersinia_pestis_A1122_uid158119 Yersinia_pestis_Angola_uid58485 Yersinia_pestis_Antiqua_uid58607 Yersinia_pestis_biovar_Medievalis_Harbin_35_uid158537 Yersinia_pestis_biovar_Microtus_91001_uid58037 Yersinia_pestis_CO92_uid57621 Yersinia_pestis_D106004_uid158071 Yersinia_pestis_D182038_uid158073 Yersinia_pestis_KIM_10_uid57875 Yersinia_pestis_Nepal516_uid58609 Yersinia_pestis_Pestoides_F_uid58619 Yersinia_pestis_Z176003_uid47317 Yersinia_pseudotuberculosis_IP_31758_uid58487 Yersinia_pseudotuberculosis_IP_32953_uid58157 Yersinia_pseudotuberculosis_PB1__uid59153 Yersinia_pseudotuberculosis_YPIII_uid59151 Zobellia_galactanivorans_uid70621 Zunongwangia_profunda_SM_A87_uid48073 Zymomonas_mobilis_ATCC_10988_uid55403 Zymomonas_mobilis_ATCC_29191_uid170612 Zymomonas_mobilis_CP4___NRRL_B_14023_uid229874 Zymomonas_mobilis_NCIMB_11163_uid41019 Zymomonas_mobilis_pomaceae_ATCC_29192_uid68445 Zymomonas_mobilis_ZM4_uid58095 diff -r e2627dcbd8b9 -r ebf3bc09c383 snpEff/snpEff.jar Binary file snpEff/snpEff.jar has changed