# HG changeset patch
# User jingchunzhu
# Date 1442961663 25200
# Node ID b88b95642f593c1d997c3496eb1df01c033bba2f
# Parent  3e5680fecd7ab7a4a71a865d1a5bdd9a69d5f7bf
fix

diff -r 3e5680fecd7a -r b88b95642f59 seg2matrix/CGData/BaseTable.py
--- a/seg2matrix/CGData/BaseTable.py	Tue Sep 22 15:16:19 2015 -0700
+++ b/seg2matrix/CGData/BaseTable.py	Tue Sep 22 15:41:03 2015 -0700
@@ -75,7 +75,9 @@
                     if len(row) > i:
                         try:
                             setattr(r, col, colType[col](row[i]))
-                        except ValueError:  
+                        except ValueError:
+                            skip=1
+                            break
                             raise ValueError( "col invalid type %s on line %d" % (row[i], linenum))
                     else:
                         if isOptional: