# HG changeset patch
# User jingchunzhu
# Date 1442529533 25200
# Node ID 7de3db823f903cefc583ba047e086d8f5763d992
# Parent  3a036a34c362340a18a70d578b5bc8cc5d67b0d8
fix

diff -r 3a036a34c362 -r 7de3db823f90 seg2matrix/segToMatrixGalaxy.py
--- a/seg2matrix/segToMatrixGalaxy.py	Thu Sep 17 15:00:45 2015 -0700
+++ b/seg2matrix/segToMatrixGalaxy.py	Thu Sep 17 15:38:53 2015 -0700
@@ -40,8 +40,9 @@
     seg.load(sys.argv[1])
     
     refgene = CGData.RefGene.RefGene()
-    refgene.load(os.path.dirname(sys.argv[0])+"/"+sys.argv[2])
-    
+    refgene.load(sys.argv[2])
+#    refgene.load(os.path.dirname(sys.argv[0])+"/"+sys.argv[2])
+
     handle = open(sys.argv[3], "w")
     m = matrix_write(handle)    
     CGData.SegToMatrix.seg_to_matrix(seg, m)