view seg2matrix/getRefGene_hg19.sh @ 37:e81019e3ac99

Updated synapseGetDataset to look at the filename rather than the (no longer existant) content type field to determine if the data is in zip format

#!/bin/bash

curl -O http://hgdownload.cse.ucsc.edu/goldenPath/hg19/database/refGene.txt.gz
gunzip -c refGene.txt.gz > refGene_hg19
echo '{ "name" : "refGene_hg19", "type" : "genePredExt", "assembly" : "hg19", "url":"http://hgdownload.cse.ucsc.edu/goldenPath/hg19/database/refGene.txt.gz"}' > refGene_hg19.json