Mercurial > repos > melissacline > ucsc_cancer_utilities
view seg2matrix/CGData/GenomicMatrix.py @ 34:d8e98030eca9
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author | jingchunzhu <jingchunzhu@gmail.com> |
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date | Fri, 24 Jul 2015 14:56:37 -0700 |
parents | ab20c0d04f4a |
children |
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import csv import CGData import CGData.BaseMatrix class GenomicMatrix(CGData.BaseMatrix.BaseMatrix): __format__ = { "name" : "genomicMatrix", "type" : "type", "form" : "matrix", "rowType" : "probeMap", "colType" : "idMap", "valueType" : "float", "nullString" : "NA", "links" : { "dataSubType" : {} } } def __init__(self): CGData.BaseMatrix.BaseMatrix.__init__(self) def init_blank(self, cols, rows): super(GenomicMatrix, self).init_blank(cols=cols,rows=rows) if 'cgdata' not in self: self['cgdata'] = { 'type' : 'genomicMatrix' } def get_probe_list(self): return self.get_row_list() def get_sample_list(self): return self.get_col_list() def get_data_subtype(self): return self.get('cgdata', {}).get('dataSubType', None)