view xenaHeader.py @ 52:3a036a34c362

better handle of input file

import argparse
import string

def main():
    parser = argparse.ArgumentParser()
    parser.add_argument("output", type=str, help="outputfile")
    args = parser.parse_args()

    fout= open(args.output,'w')
    fout.write("#"+string.join(["sample","chr","start","end","reference","alt","gene","effect","DNA_VAF","RNA_VAF","Amino_Acid_Change"],"\t")+"\n")
    fout.close()

if __name__ == '__main__':
    main()