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view seg2matrix/getRefGene_hg19.sh @ 47:23d98125d20c

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parse snpEff output
author jingchunzhu
date Thu, 13 Aug 2015 23:26:33 -0700
parents ab20c0d04f4a
children
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#!/bin/bash

curl -O http://hgdownload.cse.ucsc.edu/goldenPath/hg19/database/refGene.txt.gz
gunzip -c refGene.txt.gz > refGene_hg19
echo '{ "name" : "refGene_hg19", "type" : "genePredExt", "assembly" : "hg19", "url":"http://hgdownload.cse.ucsc.edu/goldenPath/hg19/database/refGene.txt.gz"}' > refGene_hg19.json