Mercurial > repos > melissacline > ucsc_cancer_utilities

view seg2matrix/CGData/ProbeMap.py @ 47:23d98125d20c

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parse snpEff output
author jingchunzhu
date Thu, 13 Aug 2015 23:26:33 -0700
parents ab20c0d04f4a
children
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import CGData.BaseTable


class ProbeMap(CGData.BaseTable.BaseTable):
    __format__ =  {
            "name" : "probeMap",
            "form" : "table",
            "columnOrder" : [
                "probe",
                "aliases",
                "chrom",
                "chrom_start",
                "chrom_end",
                "strand"
            ],
            "primaryKey" : "probe",
            "columnDef" : {
				"chrom_start" : { "type" : "int", "index" : 1 },
				"chrom_end" : { "type" : "int", "index" : 1 }
            }
        }
        
    def __init__(self):
        CGData.BaseTable.BaseTable.__init__(self)