diff mergeMutationDatasets.xml @ 43:eb5acf81e609

improve messages

--- a/mergeMutationDatasets.xml	Thu Aug 06 00:30:49 2015 -0700
+++ b/mergeMutationDatasets.xml	Fri Aug 07 00:13:13 2015 -0700
@@ -14,9 +14,9 @@
   </command>
   <inputs>
     <param name="inputA" format="tabular" type="data" label="Xena Mutation by Position Dataset A"/>
-    <param type="text" name="labelForDatasetA"  label="Dataset A Label (eg. A)" value="dataset A"/>
+    <param type="text" name="labelForDatasetA"  label="Dataset A Label (eg. LGG)" value="A"/>
     <param name="inputB" format="tabular" type="data" label="Xena Mutation by Position Dataset B"/> 
-    <param type="text" name="labelForDatasetB"  label="Dataset B Label (eg. B)" value="dataset B"/>
+    <param type="text" name="labelForDatasetB"  label="Dataset B Label (eg. GBM)" value="B"/>
  </inputs>
   <outputs>
     <data name="errorLog" format="data" label="Execution Log"/>
@@ -26,6 +26,10 @@
   <help>
     ***Merge Xena Positional Mutation Datasets***
 
+    Output Mutation by Position datafile is ready to be imported into a Xena Hub.
+
+    Output Data Source is of format Rows (Samples) by Columns (identifiers), ready to be imported into a Xena Hub.
+
     Given two datasets of mutation data as formatted for the UCSC Xena Browser, merge them to produce a third dataset that is the union of the first two.  The new dataset will contain all mutations from either dataset. 
 
     To maintain provenance, this script also outputs a second matrix, with one row for each sample ID that appears in the output dataset, and two columns per row indicating which input dataset(s) contained some mutation data for that sample.  By default, the input dataset name is used to indicate which input file each column came from.  Optionally, the user can specify descriptive labels to be used in place of the dataset names.   </help>