Mercurial > repos > melissacline > ucsc_cancer_utilities

diff seg2matrix/getRefGene_hg19.sh @ 31:ab20c0d04f4a

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add seg2matrix tool
author jingchunzhu
date Fri, 24 Jul 2015 13:10:11 -0700
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/seg2matrix/getRefGene_hg19.sh	Fri Jul 24 13:10:11 2015 -0700
@@ -0,0 +1,5 @@
+#!/bin/bash
+
+curl -O http://hgdownload.cse.ucsc.edu/goldenPath/hg19/database/refGene.txt.gz
+gunzip -c refGene.txt.gz > refGene_hg19
+echo '{ "name" : "refGene_hg19", "type" : "genePredExt", "assembly" : "hg19", "url":"http://hgdownload.cse.ucsc.edu/goldenPath/hg19/database/refGene.txt.gz"}' > refGene_hg19.json