Mercurial > repos > melissacline > ucsc_cancer_utilities

diff seg2matrix/mapSegToGeneMatrix.py @ 51:728eda331f07

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better handle of input
author jingchunzhu@gmail.com
date Thu, 17 Sep 2015 14:33:21 -0700
parents 61f03b481b0d
children 59dbe857f5d4
line wrap: on
line diff
--- a/seg2matrix/mapSegToGeneMatrix.py	Tue Aug 25 23:42:17 2015 -0700
+++ b/seg2matrix/mapSegToGeneMatrix.py	Thu Sep 17 14:33:21 2015 -0700
@@ -35,9 +35,14 @@
     while 1:
         count = count+1
         #print count
-        line =string.strip(fin.readline())
-        if line =="":
+        line =fin.readline()
+        if line =="": # end of file
             break
+        if count ==1:
+            continue #ignore the first line
+        line = string.strip(line)
+        if line == "": # empty line
+            continue
         if line[0]=="#":
             continue
         tmp = string.split(line,"\t")