Mercurial > repos > melissacline > ucsc_cancer_utilities

diff seg2matrix/CGData/SegToMatrix.py @ 54:59dbe857f5d4

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introduce normal_CNV parameter
author jingchunzhu
date Thu, 17 Sep 2015 22:03:04 -0700
parents 8ef79bd0be9a
children
line wrap: on
line diff
--- a/seg2matrix/CGData/SegToMatrix.py	Thu Sep 17 15:38:53 2015 -0700
+++ b/seg2matrix/CGData/SegToMatrix.py	Thu Sep 17 22:03:04 2015 -0700
@@ -10,8 +10,7 @@
 if os.path.exists(libFile):
     segLib = ctypes.cdll.LoadLibrary(libFile)
 
-
-def seg_to_matrix(seg_handle, out_handle):
+def seg_to_matrix(seg_handle, out_handle, NORMAL_CNV):
     """
     Turn a segment file into a segmented matrix.
     
@@ -29,4 +28,4 @@
         return 0
 
     printbackTYPE = ctypes.CFUNCTYPE(ctypes.c_int, ctypes.c_char_p)
-    segLib.print_matrix(s, t, printbackTYPE(printback))
+    segLib.print_matrix(s, t, printbackTYPE(printback), NORMAL_CNV)